Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04216 and RBAM_025940

See Amino acid alignment / Visit BSNT_04216 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:38
# Commandline: needle
#    -asequence dna-align/BSNT_04216___lrgB.1.9828.seq
#    -bsequence dna-align/RBAM_025940___ysbB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04216___lrgB-RBAM_025940___ysbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04216___lrgB-RBAM_025940___ysbB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04216___lrgB
# 2: RBAM_025940___ysbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 697
# Identity:     566/697 (81.2%)
# Similarity:   566/697 (81.2%)
# Gaps:          14/697 ( 2.0%)
# Score: 2342.0
# 
#
#=======================================

BSNT_04216___      1 ATGGAAAGCACAATGAGTCCTTATTTTGGGATTGTCGTATCACTTGCTGC     50
                                 ||||||||.|||||.||.||||||||.||||||||.||
RBAM_025940__      1 ------------ATGAGTCCATATTTCGGTATTGTCGTTTCACTTGCGGC     38

BSNT_04216___     51 ATTCGGCATCGGCACCTTTTTATTTAAGAAAACGAAAGGCTTCTTCCTTT    100
                     .||.|||||||||||.|.|||||||||.|||||||.||||||.|||||.|
RBAM_025940__     39 CTTTGGCATCGGCACGTATTTATTTAAAAAAACGAGAGGCTTTTTCCTCT     88

BSNT_04216___    101 TCACTCCTTTGTTTGTTGCCATGGTGCTGGGGATCGCATTTT-TAAAAAT    149
                     ||||.||..|||||||.||.||||||||.||.||| |.|||| |.||..|
RBAM_025940__     89 TCACCCCGCTGTTTGTCGCGATGGTGCTTGGAATC-CTTTTTCTGAAGCT    137

BSNT_04216___    150 CGGCGGTTTTTCCTACGCGGATTATAATAACGGGGGAGAGATCATTAAGT    199
                     ||||||||||||.||.|..||||||||.|.|||||||||.||.|||||.|
RBAM_025940__    138 CGGCGGTTTTTCATATGAAGATTATAAAAGCGGGGGAGACATTATTAAAT    187

BSNT_04216___    200 TTTTCCTTGAACCGGCAACGATCGCATTTGCAATTCCTTTGTACAAACAA    249
                     |.|||||.||.||.||.||||||||.|||||.||.|||||.||||||||.
RBAM_025940__    188 TCTTCCTGGAGCCCGCGACGATCGCTTTTGCGATCCCTTTATACAAACAG    237

BSNT_04216___    250 AGAGATAAGCTTAAAAAATACTGGTGGCAAATCATGGCCTCCATTATTGC    299
                     .|.||.||.||.|||||||||||||||||.||||||.|.||.||.||||.
RBAM_025940__    238 CGTGACAAACTGAAAAAATACTGGTGGCAGATCATGTCTTCTATCATTGT    287

BSNT_04216___    300 CGGCTCTATCTGCTCTGTCACGATTGTTTATTTGCTCGCTAAAGGCATTC    349
                     |||||||||||||||.|||||||||||.||||||.||||.||||||||||
RBAM_025940__    288 CGGCTCTATCTGCTCAGTCACGATTGTCTATTTGATCGCAAAAGGCATTC    337

BSNT_04216___    350 ATCTCGATTCGGCCGTAATGAAAAGCATGCTTCCGCAGGCGGCTACAACG    399
                     ||||.||..|||||||.||||||||||||||||||||||||||.||||||
RBAM_025940__    338 ATCTTGACGCGGCCGTTATGAAAAGCATGCTTCCGCAGGCGGCGACAACG    387

BSNT_04216___    400 GCAATTGCGCTTCCTTTATCAAAAGGCATCGGGGGCATCAGCGACATCAC    449
                     ||||||||.|||||..|.||||||||.|||||.|||||||.|||||||||
RBAM_025940__    388 GCAATTGCCCTTCCGCTGTCAAAAGGAATCGGCGGCATCACCGACATCAC    437

BSNT_04216___    450 AGCCTTTGCGGTCATCTTTAACGCTGTCATCGTATATGCGCTCGGAGCAT    499
                     .||.||.||.||.||.||.|||||.||.|||||.|||||..|.||.||..
RBAM_025940__    438 CGCTTTCGCCGTTATTTTCAACGCCGTTATCGTCTATGCTATGGGCGCTC    487

BSNT_04216___    500 TGTTCTTGAAGGTGTTTAAAGTGAAAAATCCGATTTCTAAAGGATTGGCT    549
                     |.|||||.||..||||||||||||||.|.|||||.|||||||||.|||||
RBAM_025940__    488 TATTCTTAAAATTGTTTAAAGTGAAACACCCGATCTCTAAAGGACTGGCT    537

BSNT_04216___    550 CTTGGAACATCCGGACATGCACTTGGTGTAGCGGTCGGGATTGAGATGGG    599
                     ||.||.|||||.|||||.|||||.|||||.||||||||.|||||||||||
RBAM_025940__    538 CTCGGCACATCAGGACACGCACTCGGTGTTGCGGTCGGTATTGAGATGGG    587

BSNT_04216___    600 AGAAGTTGAAGCTGCGATGGCAAGTATTGCTGTTGTCGTAGTAGGAGTGG    649
                     ||||||.|||||.||.|||||||||||.||.||||||||.||||||||||
RBAM_025940__    588 AGAAGTAGAAGCGGCAATGGCAAGTATCGCGGTTGTCGTCGTAGGAGTGG    637

BSNT_04216___    650 TAACGGTTTTGGTCATCCCTGTGTTCGTGCAGCTGATCGGTGGATAA    696
                     |.|||||..||||.||.||.||.|||||.|||||.|||||.||||||
RBAM_025940__    638 TGACGGTGCTGGTTATTCCGGTATTCGTTCAGCTCATCGGAGGATAA    684


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.