Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04229 and RBAM_026010

See Amino acid alignment / Visit BSNT_04229 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:39
# Commandline: needle
#    -asequence dna-align/BSNT_04229___ytxB.1.9828.seq
#    -bsequence dna-align/RBAM_026010___ytxB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04229___ytxB-RBAM_026010___ytxB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04229___ytxB-RBAM_026010___ytxB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04229___ytxB
# 2: RBAM_026010___ytxB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 675
# Identity:     451/675 (66.8%)
# Similarity:   451/675 (66.8%)
# Gaps:          66/675 ( 9.8%)
# Score: 1383.0
# 
#
#=======================================

BSNT_04229___      1 ATGA--AACGAAAAACGGCTGTCAAAT-GGCT--GGCAGTGCTTGCAGGT     45
                     ||||  ||  .||.|.||||||||..| ||||  |||.|.|   ||.||.
RBAM_026010__      1 ATGAGGAA--TAAGAAGGCTGTCACTTGGGCTGCGGCTGCG---GCGGGA     45

BSNT_04229___     46 GCTGG---TTTACTCTATTGGGGAAA---CAAAACGTATTTGAATGTATC     89
                     ||.||   |||.||   .||||.|||   ||||   |||.|||||.|.||
RBAM_026010__     46 GCGGGCCTTTTGCT---GTGGGCAAACCGCAAA---TATCTGAATCTGTC     89

BSNT_04229___     90 GCCGAAAGAAATCAGGGTATGGGTATTGTCGTTCGGAGTCTTTGCACCTC    139
                     |||.||.||.|||.||.|.|||||.||.||||||||.||.|||||.||.|
RBAM_026010__     90 GCCTAAGGAGATCCGGCTGTGGGTGTTATCGTTCGGTGTTTTTGCGCCGC    139

BSNT_04229___    140 TGATGTTTATCGGGATATCCATCGTCAGGCCACTTGTTTTATTTCCGGTG    189
                     |..||||||||||.||.||||||||||||||..||||..|.|||||.||.
RBAM_026010__    140 TTGTGTTTATCGGAATTTCCATCGTCAGGCCTTTTGTGCTGTTTCCCGTA    189

BSNT_04229___    190 TCTGTTATTTCAATAGCTGGCGGACTTGCGTTTGGCCCGCTTCTCGGCAC    239
                     ||..|..||||..|.||.||.|||.|.|||||.|||||||||.|||||||
RBAM_026010__    190 TCAATCGTTTCCGTCGCCGGAGGATTGGCGTTCGGCCCGCTTTTCGGCAC    239

BSNT_04229___    240 GCTTTATACGTTATTCGGTTCGATGTGCGCTTCAGCTGTTTCGTTTTTTG    289
                     ..|.||||||.|....||.||.|||.|||||.|.||.|..||.|||||||
RBAM_026010__    240 CGTGTATACGCTGGCGGGCTCAATGGGCGCTGCCGCCGCGTCTTTTTTTG    289

BSNT_04229___    290 CGGCCGGTTTGTTTTCGGC-------GA-AAAAGAACGGGCATTACGAAA    331
                     ||||.||..|||||   ||       || |||||  |.|.|||   |.||
RBAM_026010__    290 CGGCGGGGCTGTTT---GCCTTTAATGAGAAAAG--CCGTCAT---GGAA    331

BSNT_04229___    332 GGCTTGAAGCCATACAGAAGCAAATGGAGGATAAC----GGATTTTTCTA    377
                     ...|.||||||||.||.|||||    ||.||.|||    ||.||.||.||
RBAM_026010__    332 AAATGGAAGCCATTCAAAAGCA----GATGAAAACCAATGGCTTCTTTTA    377

BSNT_04229___    378 TATCTTTCTTTTGAGAATCCTGCCGATCAATTTTGATTTCGTCAGCTATG    427
                     |||.|||.|..||.|.||.|||||..|.||.||||||.|..|||||||||
RBAM_026010__    378 TATTTTTATCCTGCGCATTCTGCCTGTTAACTTTGATGTGATCAGCTATG    427

BSNT_04229___    428 CGGCAGGCCTTTCCAATGTCAAAGCGCTGCCGTATTTTGCGGCAACGGCT    477
                     |.||.|||||.||.||.||||...||.||.||||||||..|||.||.||.
RBAM_026010__    428 CCGCGGGCCTATCGAAAGTCAGGCCGATGACGTATTTTTTGGCGACCGCA    477

BSNT_04229___    478 GTGGGAATCATCCCTGGGACGATTGCGCTTAATGTGCTGGGTGCGAGCTT    527
                     |.|||.|||||.||.||||||||.|..||.||||||||.||.||||||||
RBAM_026010__    478 GCGGGCATCATTCCGGGGACGATCGTCCTGAATGTGCTCGGCGCGAGCTT    527

BSNT_04229___    528 TTTGGCTGGCAAT---CTGCCCGCTTTCTTTATG--GTGCTCGCTTTGTA    572
                     |.||.|.||.|||   |||.|||...||     |  |||.||..|.|.||
RBAM_026010__    528 TATGTCCGGAAATGTGCTGACCGTACTC-----GGCGTGATCTGTCTTTA    572

BSNT_04229___    573 TATCGTGTTTATCTCAC-TGCCGTTCATCTTCAGAAAGAAAATGCAAAAC    621
                     .|||||.|||.|.||.| |.||||| ||.||.|.||||||..|||...|.
RBAM_026010__    573 CATCGTATTTTTATCGCTTCCCGTT-ATATTTAAAAAGAAGGTGCGCCAT    621

BSNT_04229___    622 TTGTTCCAAG----AATCAAATTAA    642
                     ||||||...|    ||.|.||    
RBAM_026010__    622 TTGTTCGGCGGTGAAAGCTAA----    642


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