Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04239 and RBAM_026070

See Amino acid alignment / Visit BSNT_04239 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:39
# Commandline: needle
#    -asequence dna-align/BSNT_04239___ytcD.1.9828.seq
#    -bsequence dna-align/RBAM_026070___ytcD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04239___ytcD-RBAM_026070___ytcD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04239___ytcD-RBAM_026070___ytcD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04239___ytcD
# 2: RBAM_026070___ytcD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 392
# Identity:     286/392 (73.0%)
# Similarity:   286/392 (73.0%)
# Gaps:          16/392 ( 4.1%)
# Score: 1014.5
# 
#
#=======================================

BSNT_04239___      1 ATGGAGAAGAAAAAATATAACATTTCTGTTGAAGCGACTCTTGAAGTGAT     50
                     .||..||||||||||||.||.||.||.||.||||||.|.|||||||||||
RBAM_026070__      1 TTGCTGAAGAAAAAATACAATATATCCGTAGAAGCGGCGCTTGAAGTGAT     50

BSNT_04239___     51 CGGTGGGAAATGGAAATGCGTCATTTTATGCCATCTGACGCACGGAAAAA    100
                     |||.||.||||||||.||.||.||..|.|||||.||.|.||.|||.||||
RBAM_026070__     51 CGGCGGAAAATGGAAGTGTGTGATCCTCTGCCACCTCATGCGCGGGAAAA    100

BSNT_04239___    101 AACGCACAAGTGAATTAAAACGCCTAATGCCCAATATCACGCAAAAAATG    150
                     ||||.|||||.|||||.||.||.||.|||||..|.|||||.||.||.|||
RBAM_026070__    101 AACGGACAAGCGAATTGAAGCGGCTTATGCCGGACATCACCCAGAAGATG    150

BSNT_04239___    151 CTGACTCAGCAGCTGCGCGAGCTGGAAGCGGACAGTGTCATTAACCGAAT    200
                     |||||.|||||..||||.|||||||||||.|||.|.|||||.|||||.||
RBAM_026070__    151 CTGACACAGCAATTGCGGGAGCTGGAAGCTGACGGCGTCATCAACCGGAT    200

BSNT_04239___    201 CGTATATAATCAAGTTCCTCCCAAAGTGGAATACGAGCTCAGCGAATACG    250
                     |||.||.|||||.||.||.||.|||||||||||||||||.||.|||||||
RBAM_026070__    201 CGTGTACAATCAGGTGCCGCCGAAAGTGGAATACGAGCTGAGTGAATACG    250

BSNT_04239___    251 GCCGCAGCTTAGAAGGGATTTTAGATATGCTGTGTGCTTGGGGAGCGAAT    300
                     |.|.|||..|.|||.|.||||||.|...||||||.|..|||||.||||..
RBAM_026070__    251 GGCACAGTCTGGAAAGAATTTTAAACGCGCTGTGCGACTGGGGCGCGATG    300

BSNT_04239___    301 CATATT----AACAGAGTGTACGGGGATACATTTTCTGTGCTAGAAGAAA    346
                     ||||||    |||    .||||||.||....|.|||.||..||||.||.|
RBAM_026070__    301 CATATTGCTAAAC----GGTACGGCGAGGTGTCTTCCGTTTTAGAGGACA    346

BSNT_04239___    347 GTGTGCTCAATGATAAGTTAAAA----CAGG---AATCATAA    381
                     |..|..|.|||||.||.||.|||    |.||   ||| ||||
RBAM_026070__    347 GCATTTTAAATGACAAATTTAAAGAACCGGGACAAAT-ATAA    387


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