Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04240 and RBAM_026080

See Amino acid alignment / Visit BSNT_04240 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:39
# Commandline: needle
#    -asequence dna-align/BSNT_04240___ytbD.1.9828.seq
#    -bsequence dna-align/RBAM_026080___ytbD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04240___ytbD-RBAM_026080___ytbD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04240___ytbD-RBAM_026080___ytbD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04240___ytbD
# 2: RBAM_026080___ytbD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1230
# Identity:     886/1230 (72.0%)
# Similarity:   886/1230 (72.0%)
# Gaps:          69/1230 ( 5.6%)
# Score: 3115.0
# 
#
#=======================================

BSNT_04240___      1 ATGACTTCA----GCCAATAAAAGCAATATTCCTGCACTACTGGCTTTGG     46
                     |||.|||||    |||    |||||.||.|.||.||.||.|||||.||.|
RBAM_026080__      1 ATGTCTTCACATCGCC----AAAGCTATTTACCAGCGCTGCTGGCATTAG     46

BSNT_04240___     47 CCGTAAGTGCATTCGCAATAGGGACAACTGAATTTATCAGTGTCGGCCTT     96
                     ||||.||.||.||.||.||.||.|||||.|||||||||||.|||||.||.
RBAM_026080__     47 CCGTCAGCGCTTTTGCGATCGGCACAACCGAATTTATCAGCGTCGGGCTG     96

BSNT_04240___     97 TTGCCGCTCATTGCTGATGACCTGGATATTCCCGTCACGACAGCAGGATT    146
                     .|||||||.||..||.|.||.|||.||||.||.||.||.||.||.|||.|
RBAM_026080__     97 CTGCCGCTTATATCTCAAGATCTGCATATACCTGTGACAACGGCGGGACT    146

BSNT_04240___    147 GACCGTTTCCCTTTATGCGCTCGGCGTTACATTTGGGGCACCTATATTAA    196
                     .|||||||||.|.|||||.||.|||||.|||||.||.||.||..|.||||
RBAM_026080__    147 TACCGTTTCCATGTATGCTCTGGGCGTGACATTCGGCGCGCCGGTTTTAA    196

BSNT_04240___    197 CTTCATTGACCTCAAGCATGTCACGTAAGACACTATTGCTTTGGATCATG    246
                     |.||..|.||.||..|||||||.||.||.||.||..||||.|||.|.|||
RBAM_026080__    197 CGTCTCTCACATCCGGCATGTCGCGGAAAACGCTGCTGCTCTGGGTGATG    246

BSNT_04240___    247 TTTATTTTTATTGCCGGTAATACGATGGCAGCAACCGCTTCAAGCATCGG    296
                     ||.||||||||.|||||.|||||..|.|||||.|.||||||....|||||
RBAM_026080__    247 TTAATTTTTATCGCCGGAAATACACTCGCAGCGAGCGCTTCCTCAATCGG    296

BSNT_04240___    297 GATTTTACTAGCAGCACGTGTGATATCGGCATTTTCGCACGGTGTGTTTA    346
                     ..|.|||||.||.|||||.||.||.|||||.|||||.|||||..|.||.|
RBAM_026080__    297 CGTCTTACTGGCGGCACGGGTCATTTCGGCTTTTTCCCACGGCATTTTCA    346

BSNT_04240___    347 TGTCGATCGGTTCGACAATCGCAGCGGATATTGTCCCGGAGGATAAAAGG    396
                     ||||.|||||..|.||||||||.||..||||.||.||||||.|||||||.
RBAM_026080__    347 TGTCAATCGGGGCAACAATCGCCGCCAATATCGTGCCGGAGCATAAAAGA    396

BSNT_04240___    397 GCTAGCGCGATTTCAATTATGTTTACTGGCCTCACTGTGGCAACTGTAAC    446
                     ||.|||||||||||.||.|||||.||.||.||.||.|||||.||.||.||
RBAM_026080__    397 GCAAGCGCGATTTCCATCATGTTCACGGGGCTGACGGTGGCTACGGTGAC    446

BSNT_04240___    447 CGGAGTTCCTTTTGGGACATTTATCGGCCAGCAGTTCGGCTGGCGTTTCG    496
                     |||.|||||.||.||.||.|.|.||||||||||.|||||.|||.|..|||
RBAM_026080__    447 CGGCGTTCCGTTCGGCACCTATCTCGGCCAGCAATTCGGATGGAGAATCG    496

BSNT_04240___    497 CCTTTATGGTCATTATCGCCGTCGGAATCATTGCTTTCATTACAAATG-G    545
                     |.|||...||||||.|.||.||.||||||||.||.|||.|.|||||.| |
RBAM_026080__    497 CATTTGCCGTCATTGTGGCGGTAGGAATCATCGCATTCCTCACAAACGCG    546

BSNT_04240___    546 CATTCTTGTACCGTCCAAATTACGAAAAGGGACGAAAACAACG-AT----    590
                     | |.||.||.|||||..|.||.||.||||||||||||||  || ||    
RBAM_026080__    547 C-TCCTCGTTCCGTCGCATTTGCGCAAAGGGACGAAAAC--CGCATTTTC    593

BSNT_04240___    591 ---GCGGGATCAATTGAAGCTTGTGACAAACAGCCGGTTATTGCTTTTAT    637
                        ||.||      |.||.||.||.||||||.||||||||||||||||||
RBAM_026080__    594 CGAGCAGG------TCAAACTCGTCACAAACGGCCGGTTATTGCTTTTAT    637

BSNT_04240___    638 TTGTCATTACAGCGCTTGGATACGGAGGAACATTCGTTGTGTTCACGTAT    687
                     ||.|||||||.|||.|.||.|||||.|||||.||.||.|||||.||||||
RBAM_026080__    638 TTATCATTACCGCGTTAGGCTACGGCGGAACGTTTGTCGTGTTTACGTAT    687

BSNT_04240___    688 CTGTCTCCCCTGCTTCAGGAAGTAACAGGCTT---CAAAGCCGGGACTGT    734
                     .|.|||||.||.||||||||.|||||.||.||   .|||   |..||.||
RBAM_026080__    688 TTATCTCCGCTTCTTCAGGAGGTAACCGGTTTTCAGAAA---GAAACCGT    734

BSNT_04240___    735 TGCAGTGATTCTGCTCGGATACGGAATAGCTATTGCTATCGGCAATATGA    784
                     .||.|..||.|||||||..||||||||.||.|||||.|||||.||.||||
RBAM_026080__    735 CGCGGCCATCCTGCTCGTTTACGGAATTGCGATTGCCATCGGAAACATGA    784

BSNT_04240___    785 TTGGCGGAAAGC----TGTCAAACCGAAATCCGATTGCCGCTTTATTCTA    830
                     ||||||    ||    |.|||||||||||||||.|....||.||.||.||
RBAM_026080__    785 TTGGCG----GCCGTTTATCAAACCGAAATCCGCTGAAAGCCTTGTTTTA    830

BSNT_04240___    831 TATGTTTATCGTACAAGCAATTGTTCTATTCGTACTGACATTTACAGCCC    880
                     ||||||.||.||.||.||...|||.||.||.||.|||||.|||||.||.|
RBAM_026080__    831 TATGTTCATTGTCCAGGCTGCTGTGCTGTTTGTTCTGACTTTTACCGCGC    880

BSNT_04240___    881 CGTATCAAGCAGCAGGGCTCATTACCATTCTCTGTATGGGATTGCTGGCC    930
                     |||.|.||.||||.|||||.||.||||||.|.|..|||||..||.||||.
RBAM_026080__    881 CGTTTAAAACAGCCGGGCTGATCACCATTATTTTCATGGGGCTGTTGGCG    930

BSNT_04240___    931 TTTATGAACGTGCCCGGCCTTCAGGTGTATGTCGTCATGCTGGCTGAGCG    980
                     ||||||||.|||||.||.||||||||.||||||||.||||||..|||.||
RBAM_026080__    931 TTTATGAATGTGCCGGGGCTTCAGGTATATGTCGTGATGCTGAGTGAACG    980

BSNT_04240___    981 TTTTGTCCCGAGTGCAGTTGACGTCGCATCCGCGATGAATATCGCTGCCT   1030
                     |||||..||.||.||.|||||....|||||.||..|.||||||||.||.|
RBAM_026080__    981 TTTTGCGCCAAGCGCCGTTGATACAGCATCAGCCTTAAATATCGCGGCAT   1030

BSNT_04240___   1031 TTAATGCAGGGATCGCGCTTGGGTCATACCTT---GGCGGTGTGATCACC   1077
                     |||||||.||.||||||.|.||.||.|   ||   |||||..|.||.||.
RBAM_026080__   1031 TTAATGCCGGAATCGCGATCGGCTCGT---TTGCCGGCGGAATCATTACA   1077

BSNT_04240___   1078 GATTCAATCGGATTGATTCATACCGCTTGGATAGGCGGATTAATGGTGGT   1127
                     ||.|||||||||.|.|||||||||||||||||.||.|...|.||||||.|
RBAM_026080__   1078 GACTCAATCGGAATCATTCATACCGCTTGGATCGGGGCGCTGATGGTGCT   1127

BSNT_04240___   1128 CGGTGCAGTCATTTTAACAGGCTGGAGCCG----CTTGATGGAAAAACGA   1173
                     |.|.||.|||.|.|||||.||.||||||.|    |||    |||||.||.
RBAM_026080__   1128 CAGCGCGGTCGTATTAACCGGATGGAGCAGGAAACTT----GAAAAGCGG   1173

BSNT_04240___   1174 GATCGGC------------AGGAAGCCTGA   1191
                     |||| ||            ||||.|  |||
RBAM_026080__   1174 GATC-GCACTGTCCTTGAAAGGAGG--TGA   1200


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