Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04243 and RBAM_026110

See Amino acid alignment / Visit BSNT_04243 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:40
# Commandline: needle
#    -asequence dna-align/BSNT_04243.1.9828.seq
#    -bsequence dna-align/RBAM_026110___ytaF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04243-RBAM_026110___ytaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04243-RBAM_026110___ytaF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04243
# 2: RBAM_026110___ytaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 651
# Identity:     480/651 (73.7%)
# Similarity:   480/651 (73.7%)
# Gaps:          51/651 ( 7.8%)
# Score: 1770.5
# 
#
#=======================================

BSNT_04243         1 ATGCAAATGGTTTCTATACTGCTGC---TGGCGTTGGCTGTCAGCTTGGA     47
                                       .||||||   ||||.||.||||||||||||||
RBAM_026110__      1 ------------------TTGCTGCTTTTGGCTTTTGCTGTCAGCTTGGA     32

BSNT_04243        48 CAGTTTTTCAGTCGGATTTACGTACGGATTGAGAAAAATGAAAATACCGT     97
                     |||||||||||||||.||||||||.||.|||||||||||||||||.||||
RBAM_026110__     33 CAGTTTTTCAGTCGGGTTTACGTATGGTTTGAGAAAAATGAAAATCCCGT     82

BSNT_04243        98 TTAAAGCGATTTTGGTTATCGCCTGCTGTTCCGGTGCTGTCATGTTTATA    147
                     |.|||||||||...||.|||||.||||||||.|...||||.|||||||||
RBAM_026110__     83 TCAAAGCGATTGCCGTGATCGCTTGCTGTTCAGCCTCTGTGATGTTTATA    132

BSNT_04243       148 TCCATGCTGATCGGAAGCTTTCTCACGAAGTTTTTTCCTGTATATGTGAC    197
                     ||||||||||||||....|||||.||.|||.|||||||.||||..||.||
RBAM_026110__    133 TCCATGCTGATCGGCCATTTTCTGACAAAGATTTTTCCCGTATCCGTCAC    182

BSNT_04243       198 GGAGAAGCTTGGCGGTTTGATATTGGTTGGAATCGGTGCGTGGGT--TCT    245
                     |||.||.||.|||||..||||.||..|.||||||||.||.|||||  |||
RBAM_026110__    183 GGAAAAACTGGGCGGACTGATCTTAATCGGAATCGGGGCATGGGTCATCT    232

BSNT_04243       246 GTATCAATTTTTCAAACCGGCAAAAGATAAAGAATACCTATTGCATGAAA    295
                     |  .|||||||||||||||||.|||||....||.|||.||||||||||||
RBAM_026110__    233 G--GCAATTTTTCAAACCGGCTAAAGAGCCGGATTACTTATTGCATGAAA    280

BSNT_04243       296 AAACACTGCTTAATCTAGAGGT----TCGGTCATTAGGAATTGTGATTCA    341
                     ||||..|.||||||||.||.||    |||    .|.||.||.||.|||||
RBAM_026110__    281 AAACGTTACTTAATCTTGAAGTGAAATCG----CTGGGCATCGTCATTCA    326

BSNT_04243       342 TATTTTGAGAAAACCCATGAGTGCGGATATCGACAAATCGGGTGTGATCA    391
                     ||||||||.||||||.|..||.||.|||||.||..||||.||....||.|
RBAM_026110__    327 TATTTTGAAAAAACCGACCAGCGCCGATATTGATCAATCCGGAACCATTA    376

BSNT_04243       392 ACGGAATTGAGGCGGTCTTAT--TGGGATTTGCCTTATCGATTGATGCCT    439
                     |||||.|.||||||  |||.|  |.||..|.||||||||.|||||.||.|
RBAM_026110__    377 ACGGAGTCGAGGCG--CTTCTGCTCGGTATCGCCTTATCCATTGACGCGT    424

BSNT_04243       440 TTGGAGCAGGTATAGGCGCAGCCATTCTCGGTTTTTCGCCGATTGTGATG    489
                     ||||.||.||..|.||.||.|||||||||||.|||||.|||.||.|||||
RBAM_026110__    425 TTGGCGCCGGGCTGGGAGCGGCCATTCTCGGCTTTTCTCCGGTTATGATG    474

BSNT_04243       490 AGCATCGCCGT--GGCAATCATGAGCTCGCTGTTTGTATCAATTGGAATC    537
                     |||.|..|.||  |||  |.|||||||||||||||||.|||.|.||.||.
RBAM_026110__    475 AGCGTGACTGTCGGGC--TGATGAGCTCGCTGTTTGTTTCACTCGGCATA    522

BSNT_04243       538 AATGCCGGCCATTTTCTGTCTAAG-TGGAAATGGATCGATAAAATGGCGT    586
                     ||.||.||.|||||.||.|| ||| |||||.|||||.|||||||||.|.|
RBAM_026110__    523 AACGCGGGGCATTTGCTTTC-AAGATGGAATTGGATAGATAAAATGACAT    571

BSNT_04243       587 TTTTGCCGGGGCTTCT----ATTAATCACGATTGGGCTCTGGAAATTGTA    632
                     ||||||||||..|.||    ||| |||   ||.|||.|.||||||.||||
RBAM_026110__    572 TTTTGCCGGGAGTCCTGCTGATT-ATC---ATCGGGATTTGGAAAATGTA    617

BSNT_04243       633 A    633
                     |
RBAM_026110__    618 A    618


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