Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04247 and RBAM_026130

See Amino acid alignment / Visit BSNT_04247 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:40
# Commandline: needle
#    -asequence dna-align/BSNT_04247___polA.1.9828.seq
#    -bsequence dna-align/RBAM_026130___polA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04247___polA-RBAM_026130___polA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04247___polA-RBAM_026130___polA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04247___polA
# 2: RBAM_026130___polA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2667
# Identity:    2134/2667 (80.0%)
# Similarity:  2134/2667 (80.0%)
# Gaps:          51/2667 ( 1.9%)
# Score: 8574.0
# 
#
#=======================================

BSNT_04247___      1 ATGACGGAACGAAAAAAATTAGTGCTTGTAGACGGAAACAGTCTGGCTTA     50
                     |||||||||||||||||||||||||||||.|||||||||||||||||.||
RBAM_026130__      1 ATGACGGAACGAAAAAAATTAGTGCTTGTCGACGGAAACAGTCTGGCGTA     50

BSNT_04247___     51 CCGGGCGTTTTTTGCATTGCCGCTGTTAAGCAATGATAAAGGTGTTCATA    100
                     |||.||||||||||||||||||||.|||||||||||.|||||..|.||||
RBAM_026130__     51 CCGAGCGTTTTTTGCATTGCCGCTTTTAAGCAATGAAAAAGGCATCCATA    100

BSNT_04247___    101 CGAATGCTGTATACGGCTTTGCGATGATTTTGATGAAAATGCTTGAGGAT    150
                     |.|||||.||||||||.||||||||||||||.|||||||||||.||.|||
RBAM_026130__    101 CAAATGCCGTATACGGGTTTGCGATGATTTTAATGAAAATGCTGGAAGAT    150

BSNT_04247___    151 GAAAAACCGACGCACATGCTGGTTGCGTTTGATGCCGGGAAAACAACATT    200
                     |||||.|||||.|||||||||||.||.||||||||.||.|||||.||.||
RBAM_026130__    151 GAAAAGCCGACCCACATGCTGGTGGCTTTTGATGCGGGAAAAACCACTTT    200

BSNT_04247___    201 TCGTCACGGCACATTTAAAGAATATAAAGGCGGCAGACAGAAAACCCCGC    250
                     .||.|||.|.||.||||||||||||||||||||.|||||.|||||.||||
RBAM_026130__    201 CCGCCACAGTACGTTTAAAGAATATAAAGGCGGAAGACAAAAAACGCCGC    250

BSNT_04247___    251 CTGAGCTTTCCGAACAAATGCCGTTTATCCGCGAGCTGCTGGATGCCTAC    300
                     |.||||||||.|||||.||||||||.|||||||||||.||.|||||||||
RBAM_026130__    251 CGGAGCTTTCAGAACAGATGCCGTTCATCCGCGAGCTCCTTGATGCCTAC    300

BSNT_04247___    301 CAGATCAGCCGCTATGA----ACTGGAACAATATGAAGCGGATGATATTA    346
                     .|.|||||||||||.||    .|||    |||||||||||||.|||||||
RBAM_026130__    301 AAAATCAGCCGCTACGAGCTTCCTG----AATATGAAGCGGACGATATTA    346

BSNT_04247___    347 TCGGCACACTGGCCAAATCGGCTGAAAAAGACGGATTTGAAGTAAAGGTT    396
                     |||||||.||.|||..|||.|||||||||||.||.||.|||||||||||.
RBAM_026130__    347 TCGGCACCCTTGCCGTATCTGCTGAAAAAGAAGGTTTCGAAGTAAAGGTA    396

BSNT_04247___    397 TTCTCAGGGGATAAGGATTTAACCCAGCTGGCAACGGACAAAACGACAGT    446
                     .|.||.|||||.|||||.|||||||||||.|||||.|..||||||||.||
RBAM_026130__    397 GTGTCGGGGGACAAGGACTTAACCCAGCTTGCAACCGGGAAAACGACCGT    446

BSNT_04247___    447 TGCCATTACGAGAAAGGGAATTACCGATGTTGAATTTTACACACCGGAGC    496
                     |||||||||||||||.||.||||||||.||.|||..||||||.|||||||
RBAM_026130__    447 TGCCATTACGAGAAAAGGCATTACCGACGTGGAAGATTACACGCCGGAGC    496

BSNT_04247___    497 ATGTCAAAGAGAAATATGGGCTTACGCCTGAACAAATCATTGACATGAAG    546
                     |.||..||||.||.||.||.||.||.|||...|||||||||||.||||||
RBAM_026130__    497 ACGTGCAAGAAAAGTACGGTCTGACCCCTTTGCAAATCATTGATATGAAG    546

BSNT_04247___    547 GGTCTGATGGGCGATTCCTCAGATAATATTCCGGGTGTGCCCGGCGTCGG    596
                     ||..|.|||||.|||||.||.|||||.||.|||||.||.|||||||||||
RBAM_026130__    547 GGATTAATGGGGGATTCATCCGATAACATACCGGGCGTCCCCGGCGTCGG    596

BSNT_04247___    597 AGAAAAGACTGCGATTAAGCTTTTAAAACAATTTGATTCCGTTGAAAAGC    646
                     ||||||.||.|||||||||||||||||.||.||..||||.|||||.||.|
RBAM_026130__    597 AGAAAAAACCGCGATTAAGCTTTTAAAGCAGTTCCATTCGGTTGAGAAAC    646

BSNT_04247___    647 TGCTGGAGTCCATTGACGAGGTGAGCGGAAAGAAATTGAAGGAAAAGCTT    696
                     ||||.||.||||||||.||.||.||||||||.|||||.||.|||||||||
RBAM_026130__    647 TGCTTGATTCCATTGATGAAGTCAGCGGAAAAAAATTAAAAGAAAAGCTT    696

BSNT_04247___    697 GAGGAGTTTAAGGATCAGGCATTGATGAGCAAGGAGCTTGCGACAATTAT    746
                     ||.||.|.||||||.||.||..||||||||||.|||||.|||||.|||||
RBAM_026130__    697 GAAGAATATAAGGAACAAGCCCTGATGAGCAAAGAGCTGGCGACGATTAT    746

BSNT_04247___    747 GACGGATGCTCCGATTGAGGTATCTGTTTCC--GCCC-------TGGAAT    787
                     |||..||||.||||||||.||         |  ||||       |.||.|
RBAM_026130__    747 GACAAATGCGCCGATTGAAGT---------CAAGCCCGAAGATTTAGATT    787

BSNT_04247___    788 ATCAAGGCTTTAATCGTGAACAGGTCATTGCCATCTTTAAAGATCTTGGC    837
                     |..||||.|||.|.||||||||.||..|||||||.||||||||.||.||.
RBAM_026130__    788 ACAAAGGGTTTGACCGTGAACAAGTTGTTGCCATTTTTAAAGACCTCGGT    837

BSNT_04247___    838 TTCAACACGCTTCTTGAACGGCTTGGAGAAGACAGTGCAGAA---GCAGA    884
                     ||.||.|||||||||||.|||||.||.|||||.||.|..|||   ||.||
RBAM_026130__    838 TTTAATACGCTTCTTGAGCGGCTCGGTGAAGAAAGCGGCGAAACGGCGGA    887

BSNT_04247___    885 ACAGGATCAATCGTTGGAAGACATTAATGTCAAAACAGTCACAGACG---    931
                     |.|..||      ||.||||||||.|||||..||||.|   ||||.|   
RBAM_026130__    888 AGAAAAT------TTTGAAGACATCAATGTTGAAACGG---CAGAAGAAA    928

BSNT_04247___    932 TGAC--AAGCGATATATTGGTTTCTCCATCCGCATTTGTCGTTGAACAGA    979
                     |.||  ||  |||||..|.|||||.||.|||||.||.||.||||||||.|
RBAM_026130__    929 TCACTGAA--GATATGCTCGTTTCGCCGTCCGCTTTGGTTGTTGAACAAA    976

BSNT_04247___    980 TTGGCGATAATTATCATGAAGAGCCGATTCTCGGATTTTCGATCGTAAAT   1029
                     |.||.|||||.|||||.|||||.|||||.|||||.|||||.|||||.|||
RBAM_026130__    977 TCGGTGATAACTATCACGAAGAACCGATCCTCGGCTTTTCCATCGTGAAT   1026

BSNT_04247___   1030 GAAACGGGAGCTTATTTCATTCCGAAAGACACTGCCGTTGAGTCTGAGGT   1079
                     |||||.||...|||||..|||||||||||.|..|||.||.|||||||...
RBAM_026130__   1027 GAAACAGGTCTTTATTATATTCCGAAAGAAATCGCCATTCAGTCTGAAAC   1076

BSNT_04247___   1080 GTTTAAAGAATGGGTGGAAAATGA--CGATCAGAAGAAATGGGTCTTCGA   1127
                     .||||||...||||..|||.||||  ||||  |||.||.|||||.|||||
RBAM_026130__   1077 TTTTAAATCTTGGGCTGAAGATGAATCGAT--GAAAAAGTGGGTGTTCGA   1124

BSNT_04247___   1128 CAGCAAGCGGGCTGTTGTCGCTTTGCGCTGGCAGGGCATTGAGCTGAAAG   1177
                     ||||||.||..|.||.||||||||||||||||||||.|||||||||||.|
RBAM_026130__   1125 CAGCAAACGTTCCGTCGTCGCTTTGCGCTGGCAGGGAATTGAGCTGAAGG   1174

BSNT_04247___   1178 GAGCCGAGTTTGATACGCTCCTTGCGGCTTATATCATCAACCCGGGCAAT   1227
                     ||.|.||.|||||..||||.|||||.||.||.||.||.||||||||||||
RBAM_026130__   1175 GAACGGAATTTGACGCGCTTCTTGCTGCCTACATTATAAACCCGGGCAAT   1224

BSNT_04247___   1228 TCATATGACGACGTTGCGAGTGTGGCTAAGGATTACGGCCTGCATATCGT   1277
                     ||.||.|||||.||.|||||.||.||.||.||.|||||.|||.|||||||
RBAM_026130__   1225 TCGTACGACGATGTCGCGAGCGTAGCGAAAGAATACGGGCTGAATATCGT   1274

BSNT_04247___   1278 TTCAAGTGATGAATCAGTTTATGGAAAAGGAGCAAAACGGGCAGTGCCGT   1327
                     |||||..||||||.|.||.||.||||||||.|||||.||.||.||.|||.
RBAM_026130__   1275 TTCAAAAGATGAAGCGGTATACGGAAAAGGCGCAAAGCGCGCCGTTCCGG   1324

BSNT_04247___   1328 CAGAAGACGTACTGTCTGAGCACCTTGGCCGAAAAGCGTTAGCGATTCAA   1377
                     |.|||.|.|..||..|.||.||.||.|..||.|||||||..||..||.|.
RBAM_026130__   1325 CTGAAAAAGAGCTTGCCGATCATCTCGCGCGGAAAGCGTCTGCCGTTAAC   1374

BSNT_04247___   1378 AGCCTTCGGGAAAAGCTCGTTCAAGAGCTGGAAAACAACGACCAGCTTGA   1427
                     |||||.||.||.||.||..|.||.|.|||||||.|.||..|.||||||||
RBAM_026130__   1375 AGCCTCCGTGACAAACTGCTGCACGCGCTGGAAGAAAATAATCAGCTTGA   1424

BSNT_04247___   1428 ACTGTTTGAAGAGCTGGAAATGCCTCTTGCGCTTATTCTTGGCGAAATGG   1477
                     |.|.|.||||||.||.|||.|.||.||||||||.|||||.||.|||||||
RBAM_026130__   1425 ATTATATGAAGATCTCGAACTCCCGCTTGCGCTAATTCTCGGAGAAATGG   1474

BSNT_04247___   1478 AATCAACTGGCGTCAAGGTCGATGTTGACCGTTTAAAACGGATGGGTGAA   1527
                     ||||||..||||||||.||.||||||||..|..|.||.||.|||||.|||
RBAM_026130__   1475 AATCAATGGGCGTCAAAGTGGATGTTGAAAGACTGAAGCGAATGGGCGAA   1524

BSNT_04247___   1528 GAACTGGGTGCGAAGCTGAAGGAATATGAAGAAAAAATCCATGAGATTGC   1577
                     ||.||....||.||||||||.|||||||||||||||||||||||.||.||
RBAM_026130__   1525 GAGCTCAAGGCAAAGCTGAAAGAATATGAAGAAAAAATCCATGACATCGC   1574

BSNT_04247___   1578 GGGAGAGCCGTTTAACATCAATTCTCCGAAACAGCTAGGCGTCATCTTAT   1627
                     .||.||||||||||||||||||||.||.||||||||.||||||||..|.|
RBAM_026130__   1575 CGGTGAGCCGTTTAACATCAATTCACCAAAACAGCTCGGCGTCATTCTGT   1624

BSNT_04247___   1628 TTGAAAAGATCGGCCTTCCTGTC-GTAAAGAAAACGAAAACAGGCTATTC   1676
                     ||||||||.|||||||.|| |.| |||||||||||.||||||||||||||
RBAM_026130__   1625 TTGAAAAGCTCGGCCTGCC-GCCAGTAAAGAAAACAAAAACAGGCTATTC   1673

BSNT_04247___   1677 TACGTCTGCCGATGTGCTTGAAAAGCTGGCTGACAAGCATGATATTGTCG   1726
                     .||.||.||.|||||||||||.|||||.||.|||||.||||||||.||||
RBAM_026130__   1674 CACTTCAGCTGATGTGCTTGAGAAGCTCGCAGACAAACATGATATCGTCG   1723

BSNT_04247___   1727 ACTATATTTTACAGTACAGACAAATTGGCAAGCTTCAATCAACATATATC   1776
                     ...|.|||.|.||.|||||||||||.|||||.||.|||||.||.|||||.
RBAM_026130__   1724 CGCACATTCTGCAATACAGACAAATCGGCAAACTCCAATCGACTTATATT   1773

BSNT_04247___   1777 GAAGGGCTTTTAAAGGTGACGAGACCGGATTCGCATAAAGTGCACACGCG   1826
                     ||||||||..|.||.||.|||.|...||||||.|||||||||||.||.||
RBAM_026130__   1774 GAAGGGCTGCTGAAAGTCACGCGCAAGGATTCTCATAAAGTGCATACACG   1823

BSNT_04247___   1827 ATTTAACCAGGCCTTAACGCAAACTGGCCGTCTCAGCTCGACTGATCCGA   1876
                     |||.||.|||||.||.||.|||||.||.||.||||||||.||.|||||||
RBAM_026130__   1824 ATTCAATCAGGCATTGACTCAAACCGGACGCCTCAGCTCAACGGATCCGA   1873

BSNT_04247___   1877 ACCTGCAAAACATTCCGATCAGGCTTGAGGAAGGGCGGAAAATTCGCCAA   1926
                     ||||||||||.|||||||||.||||.|||||||||||||||||.||.||.
RBAM_026130__   1874 ACCTGCAAAATATTCCGATCCGGCTGGAGGAAGGGCGGAAAATCCGTCAG   1923

BSNT_04247___   1927 GCTTTTGTGCCGTCTGAAAAAGACTGGCTCATTTTTGCAGCCGATTATTC   1976
                     |||||.||.|||||.|||...||||||||.|||||.||.|||||||||||
RBAM_026130__   1924 GCTTTCGTACCGTCCGAACCGGACTGGCTTATTTTCGCCGCCGATTATTC   1973

BSNT_04247___   1977 ACAAATCGAGCTGCGGGTGCTTGCCCATATTTCAAAGGATGAAAATCTGA   2026
                     ||||||.||..|..||||||||||.|||||||||||.|||||||||||||
RBAM_026130__   1974 ACAAATTGAATTAAGGGTGCTTGCGCATATTTCAAAAGATGAAAATCTGA   2023

BSNT_04247___   2027 TCGAAGCTTTTACAAATGATATGGATATTCACACGAAAACGGCAATGGAT   2076
                     |||||||.|||||.|||||.|||||.||||||||.|||||.||.|||||.
RBAM_026130__   2024 TCGAAGCGTTTACGAATGACATGGACATTCACACAAAAACCGCCATGGAC   2073

BSNT_04247___   2077 GTGTTCCATGTCGCTAAGGATGAAGTGACATCTGCGATGAGACGCCAGGC   2126
                     ||.||.||||||..|.|.||||||||||||...||||||.|.||||||||
RBAM_026130__   2074 GTATTTCATGTCAGTGAAGATGAAGTGACACAAGCGATGCGCCGCCAGGC   2123

BSNT_04247___   2127 GAAAGCGGTCAACTTTGGGATTGTTTACGGGATCAGCGATTACGGTCTGT   2176
                     .||.||.|||||.||.||.|||||||||||.|||||.||||||||.||||
RBAM_026130__   2124 AAAGGCCGTCAATTTCGGCATTGTTTACGGCATCAGTGATTACGGGCTGT   2173

BSNT_04247___   2177 CACAGAACCTCGGCATTACCCGGAAGGAAGCAGGAGCATTTATCGACCGC   2226
                     ||||.|||||||||||.||||||||.|||||.||.||.|||||.||||||
RBAM_026130__   2174 CACAAAACCTCGGCATCACCCGGAAAGAAGCGGGCGCTTTTATAGACCGC   2223

BSNT_04247___   2227 TATCTGGAAAGCTTCCAAGGCGTAAAAGCGTACATGGAAGATTCAGTACA   2276
                     |||.||||.||.||||..|||||.||.|||||.||||||||.||.||.||
RBAM_026130__   2224 TATTTGGAGAGTTTCCCGGGCGTCAAGGCGTATATGGAAGAATCGGTGCA   2273

BSNT_04247___   2277 GGAAGCGAAACAAAAAGGATACGTAACAACGCTTATGCATCGCCGCCGCT   2326
                     |||||||||.|||||||||||.||.||.||.||||||||.||||||||||
RBAM_026130__   2274 GGAAGCGAAGCAAAAAGGATATGTCACGACACTTATGCAGCGCCGCCGCT   2323

BSNT_04247___   2327 ACATCCCTGAGCTGACGAGCCGGAACTTTAATATCCGAAGTTTTGCGGAG   2376
                     |.||.|||||||||||.|||||.|||||.||..|.||.||.||||||||.
RBAM_026130__   2324 ATATTCCTGAGCTGACCAGCCGCAACTTCAACCTGCGGAGCTTTGCGGAA   2373

BSNT_04247___   2377 CGGACGGCCATGAATACGCCGATTCAAGGAAGCGCCGCTGATATTATCAA   2426
                     ||||||||||||||||||||||||||.|||||||||||.||||||||.||
RBAM_026130__   2374 CGGACGGCCATGAATACGCCGATTCAGGGAAGCGCCGCCGATATTATTAA   2423

BSNT_04247___   2427 AAAAGCCATGATTGACATGGCTGCCAAGCTGAAAGAAAAACAGTTGAAAG   2476
                     |||||||||||||||||||||.||..||||||||||||||.|..||||.|
RBAM_026130__   2424 AAAAGCCATGATTGACATGGCAGCTGAGCTGAAAGAAAAAAACCTGAAGG   2473

BSNT_04247___   2477 CAAGGCTTCTACTTCAAGTACACGATGAATTGATTTTTGAGGCGCCAAAG   2526
                     |..|.||.||.|||||.||.||||||||||||||||||||.|||||.|||
RBAM_026130__   2474 CGCGACTGCTGCTTCAGGTGCACGATGAATTGATTTTTGAAGCGCCTAAG   2523

BSNT_04247___   2527 GAAGAAATTGAAATTCTTGAAAAGCTTGTTCCTGAAGTGATGGAGCATGC   2576
                     ||||||||||||||..|.||.|||||.|||||||||||||||||||||||
RBAM_026130__   2524 GAAGAAATTGAAATATTAGAGAAGCTGGTTCCTGAAGTGATGGAGCATGC   2573

BSNT_04247___   2577 GCTTGCATTAGATGTGCCGTTAAAGGTGGACTTTGCATCAGGCCCATCTT   2626
                     ..|.||||||||.||||||.|.||||.|||.|.|||.|||||.||.||||
RBAM_026130__   2574 TTTGGCATTAGACGTGCCGCTGAAGGCGGATTATGCTTCAGGGCCGTCTT   2623

BSNT_04247___   2627 GGTACGATGCGAAATAA   2643
                     ||||||||||.||||||
RBAM_026130__   2624 GGTACGATGCAAAATAA   2640


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