Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04248 and RBAM_026140
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:41
# Commandline: needle
# -asequence dna-align/BSNT_04248___phoR.1.9828.seq
# -bsequence dna-align/RBAM_026140___phoR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04248___phoR-RBAM_026140___phoR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04248___phoR-RBAM_026140___phoR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04248___phoR
# 2: RBAM_026140___phoR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1816
# Identity: 1281/1816 (70.5%)
# Similarity: 1281/1816 (70.5%)
# Gaps: 152/1816 ( 8.4%)
# Score: 4417.0
#
#
#=======================================
BSNT_04248___ 1 ATGAATAAATACCGTGTGCGCCTTTTTTCTGTATTCGTTGTCTGTATGAT 50
|||||||||..|||||||||.||.||..||.||.|||||||.|||||.||
RBAM_026140__ 1 ATGAATAAAGTCCGTGTGCGTCTGTTCGCTTTACTCGTTGTATGTATCAT 50
BSNT_04248___ 51 TCTGGTGTTTTGTGTTCTCGGGCTGTTTTTACAGCAGCTTTTTGAAACAT 100
..||||.||..||||||||||.||.|||||||||||.|||.||....|||
RBAM_026140__ 51 ATTGGTTTTCAGTGTTCTCGGCCTTTTTTTACAGCATCTTATTTCTTCAT 100
BSNT_04248___ 101 CTGATCAAAGGAAAG--CAGAGGAACA-CATTGAAAAA-GAAGCAAAATA 146
|.|.|.|| ||||| |.|.|||.|| | ||||||| |||.|...|||
RBAM_026140__ 101 CCGCTGAA--GAAAGAACGGCGGATCAGC--TGAAAAAGGAATCGGTATA 146
BSNT_04248___ 147 CTT----GGCTTCGCTTCTTGATGCCGGC--AATCTG-AATAATCAAGCA 189
|.| ||| ||||||||..||||| ||||.| ||||| ||||
RBAM_026140__ 147 CATAGCGGGC----CTTCTTGACACCGGCCGAATCGGCAATAA--AAGC- 189
BSNT_04248___ 190 AATGAGAAAATCATTAAAGATGCAGGCGGCGCGCTTGATGTGAGCGCATC 239
|||||.|...|.|||...||.||.|||.||.|.||.|.|.|.|.||...|
RBAM_026140__ 190 AATGAAACGGTGATTCGTGACGCCGGCCGCACCCTCGGTATAAACGTCGC 239
BSNT_04248___ 240 CGTTATCGATACAGACGGTAAGG----TGCTGTATGGGTCA-AACGGGAG 284
|||..|| .|||..|||| .||.|||| .||| ..|||.||
RBAM_026140__ 240 CGTGCTC------AACGAGAAGGGTGACGCCGTAT--ATCATTCCGGCAG 281
BSNT_04248___ 285 ATCG-GCTGAT------TCCCAAAAGGTGCAGGCGCTTGTTTCTGGCCAT 327
||| |||||| .||..|||||.| || |||
RBAM_026140__ 282 -TCGTGCTGATGATTCAGCCGTAAAGGAG-----------TT-----CAT 314
BSNT_04248___ 328 GAGGGTATTCTGTCAACAACAGATAACAAGCTTTATTACGGACTTTCACT 377
||||..|||.||.||..|..|||| ||.||..||
RBAM_026140__ 315 -------TTCTCACAATAAAAGCGAGGAAGC-------CGTACAGTC--- 347
BSNT_04248___ 378 TAGAAGCGAAG-----------------GTGAAAAAA------------- 397
.|.||||.||| || ||||||
RBAM_026140__ 348 GAAAAGCAAAGTCATCCGCGGCACTGCCGT-AAAAAATGACGCCGGGAAA 396
BSNT_04248___ 398 ----CAGGATATGTGCTGCTTTCCGCCTCTGAAAAAAGCGACGGCTTAAA 443
|.||.|||||.||..||| |||||||.|..|.||.||| ||.||
RBAM_026140__ 397 ATTGCGGGGTATGTACTCGTTT---CCTCTGAGATCAACGGCGG-TTCAA 442
BSNT_04248___ 444 -------AGGCGAATTGTGGGGGATGCTGACGGCCAGTCTTTGTACCGCA 486
.||.|||.|||||||.||||||.|.||.||||||||||||||.
RBAM_026140__ 443 GCGTTACCGGAGAAATGTGGGGCATGCTGGCAGCAAGTCTTTGTACCGCT 492
BSNT_04248___ 487 TTTATCGTCATTGTTTATTTTTATTCCAGCATGACCTCACGTTATAAAAG 536
||||||.|.||.||||..||||||.|.|.||||||.||.|||||.||||.
RBAM_026140__ 493 TTTATCATTATCGTTTTCTTTTATACAAACATGACGTCCCGTTACAAAAA 542
BSNT_04248___ 537 GTCAATTGAGTCAGCGACAAATGTAGCCACAGAACTCTCTAAGGGCAACT 586
.|||||.||..|.||||||||.||.||.||.||.||.||.|||||.||.|
RBAM_026140__ 543 ATCAATCGACGCCGCGACAAAAGTGGCGACGGAGCTGTCCAAGGGGAATT 592
BSNT_04248___ 587 ACGATGCACGGACGTACGGCGGCTATATTAGGCGTTCTGATAAGCTAGGA 636
|.||.||.||..|.|||.||||.||....|||||.||.||....||.||.
RBAM_026140__ 593 ATGACGCCCGCTCCTACAGCGGTTACGCAAGGCGGTCGGACCGTCTCGGG 642
BSNT_04248___ 637 CATGCGATGAACAGCCTTGCCATTGATCTGATGGAAATGACGCGAACGCA 686
|.||||||||||||.||.||..|.|||.|.||||||||||||.|||||||
RBAM_026140__ 643 CGTGCGATGAACAGTCTGGCGGTCGATTTAATGGAAATGACGAGAACGCA 692
BSNT_04248___ 687 GGAAATGCAGCGGGATCGGCTGCTGACAGTCATTGAAAACATTGGCTCCG 736
|||.||||||||.|||||.|||.|.||.|||||||||||.||.||.||||
RBAM_026140__ 693 GGATATGCAGCGCGATCGTCTGTTAACCGTCATTGAAAATATCGGATCCG 742
BSNT_04248___ 737 GGCTGATTATGATCGACGGAAGAGGCTTTATTAATCTCGTAAACAGGTCT 786
|..|||||.|.||.|||||.|||||.|||||.||||||||.|||.||||.
RBAM_026140__ 743 GTTTGATTTTAATAGACGGGAGAGGTTTTATCAATCTCGTGAACCGGTCA 792
BSNT_04248___ 787 TACGCCAAGCAGTTTCATATCAATCC-GAATCATATGCTGCGCCGTCTTT 835
|||.|.|||||||||||||..||.|| ||| |.|.||||.||.||.||||
RBAM_026140__ 793 TACACGAAGCAGTTTCATACAAAGCCTGAA-CGTCTGCTTCGGCGCCTTT 841
BSNT_04248___ 836 ATCACGATGCATTTGAACATGAAGAAGTGATCCAGCTTGTCGAAGACATT 885
|.||.|||||.|||||||||||.||..|.||.|.||||||||||||||||
RBAM_026140__ 842 ACCATGATGCGTTTGAACATGAGGAGATCATTCGGCTTGTCGAAGACATT 891
BSNT_04248___ 886 TTTATGACGGAGACAAAGAAATGCAAGCTGTTAAGACTACCGATCAAAAT 935
||||||||||||||.||.||||||.|||||.|.|||||.||.|||||.||
RBAM_026140__ 892 TTTATGACGGAGACGAAAAAATGCCAGCTGCTCAGACTTCCCATCAACAT 941
BSNT_04248___ 936 AGAACGGCGTTATTTTGAAGTGGACGGTGTTCCGATTATGGGGCCGGACG 985
.||.|||||.||.||||||||.|||||.||||||||.|||||.||.||||
RBAM_026140__ 942 TGAGCGGCGCTACTTTGAAGTTGACGGCGTTCCGATCATGGGCCCTGACG 991
BSNT_04248___ 986 ATGAATGGAAAGGAATTGTGCTTGTTTTCCATGACATGACGGAAACAAAG 1035
||||||||||.||.||.||.||.||.||.||.||.||||||||||..||.
RBAM_026140__ 992 ATGAATGGAAGGGCATCGTCCTCGTCTTTCACGATATGACGGAAATTAAA 1041
BSNT_04248___ 1036 AAATTAGAGCAGATGAGGAAGGATTTTGTGGCCAATGTTTCTCATGAGCT 1085
|||||.|||||||||||.|||||.||.||.||||||||.||.|||||.||
RBAM_026140__ 1042 AAATTGGAGCAGATGAGAAAGGACTTCGTCGCCAATGTCTCCCATGAACT 1091
BSNT_04248___ 1086 GAAAACGCCGATTACGTCCATAAAAGGGTTTACGGAGACGTTATTGGACG 1135
||||||.|||||.||.||.||.|||||.||||||||.||..|.||.||||
RBAM_026140__ 1092 GAAAACACCGATCACCTCGATTAAAGGCTTTACGGAAACACTGTTAGACG 1141
BSNT_04248___ 1136 GGGCGATGGAGGATAAAGAGGCGCTTTCTGAATTTCTCTCTATTATTCTT 1185
|.||||||.|.||..||.||||||||||.||.|||||.|||||||||||.
RBAM_026140__ 1142 GAGCGATGAAAGACGAAAAGGCGCTTTCAGACTTTCTGTCTATTATTCTG 1191
BSNT_04248___ 1186 AAGGAAAGCGAAAGGCTTCAGTCTTTGGTTCAGGATTTGCTCGATCTCTC 1235
||.|||||.||..||||.||.|||.|.||.||||||||.||.|||.|.||
RBAM_026140__ 1192 AAAGAAAGTGAGCGGCTCCAATCTCTCGTGCAGGATTTACTGGATTTATC 1241
BSNT_04248___ 1236 AAAAATCGAGCAGCAAAATTTCACGCTCAGTATCGAAACGTTTGA-GCCG 1284
.||.||.|||||||||||.||.|||.|..|..|.||..|.||||| |||
RBAM_026140__ 1242 CAAGATGGAGCAGCAAAACTTTACGATGCGCGTAGAGTCCTTTGACGCC- 1290
BSNT_04248___ 1285 GCCAAAATGCTTGTTGAGATTGAAACGCTTCTGAAGCATAAGGCGGATGA 1334
||.|||||.||...|||.||||||.|||||.||..|||||||||.||.||
RBAM_026140__ 1291 GCAAAAATTCTGCATGAAATTGAAGCGCTTTTGCGGCATAAGGCTGAGGA 1340
BSNT_04248___ 1335 GAAAGGCATCTCCTTGCACCTGAATGTCCCGAAAGACCCTCAATATGTAT 1384
.|||||||||..|||.||.||..||.|||||.||||.||....|.|||..
RBAM_026140__ 1341 AAAAGGCATCAGCTTTCAGCTCGATCTCCCGGAAGAGCCGATTTTTGTGA 1390
BSNT_04248___ 1385 CTGGTGACCCGTACAGGCTGAAACAGGTATTTCTTAATCTCGTAAACAAT 1434
|.||||||.||.||||||||||.|||||||||.|.|||||.|..||||||
RBAM_026140__ 1391 CGGGTGACGCGCACAGGCTGAAGCAGGTATTTTTGAATCTGGCGAACAAT 1440
BSNT_04248___ 1435 GCGTTAACCTACACGCCTG----AGGGGGGCTCCGTGGCTATC----AAT 1476
||..|.||||||||||||| ||||..|.| |.||.|.|| .||
RBAM_026140__ 1441 GCCCTGACCTACACGCCTGAAAAAGGGACGGT--GGGGATTTCGGTACAT 1488
BSNT_04248___ 1477 GTAAAGCCCAGAGAAAAAGACATTCAGATTGAGGTTGCCGATTCTGGAAT 1526
||.|| |||||..|...|..|.||..|.||..|||||.|.|||||
RBAM_026140__ 1489 GTGAA------AGAAACCGTTGTCGATATCAAAGTGTCCGATACGGGAAT 1532
BSNT_04248___ 1527 CGGAATTCAGAAAGAAGAAATTCCGCGCATCTTTGAACGCTTTTACCGCG 1576
|||.||||||||.|||||.||.|||||.||.|||||..|.||.|||||||
RBAM_026140__ 1533 CGGCATTCAGAAGGAAGAGATCCCGCGGATATTTGAGAGATTCTACCGCG 1582
BSNT_04248___ 1577 TAGATAAAGACAGAAGCAGGAATTCGGGCGGAACTGGGCTGGGCCTTGCG 1626
|.|||||||||||||||.|.||.|||||.|||||.|||||.|||||.||.
RBAM_026140__ 1583 TGGATAAAGACAGAAGCCGCAACTCGGGAGGAACCGGGCTCGGCCTCGCC 1632
BSNT_04248___ 1627 ATTGTCAAGCATTTAATAGAGGCTCATGAAGGGAAAATTGATGTCACAAG 1676
||.||.|||||.||||||||.||.||||||||.|||||.||.||||||||
RBAM_026140__ 1633 ATCGTGAAGCACTTAATAGAAGCCCATGAAGGTAAAATCGAGGTCACAAG 1682
BSNT_04248___ 1677 CGAGCCTGGACGGGGAACTGTCTTTACCGTGACGCTGAAACGG--GCCGC 1724
||||||.||||.|||.|||||.|||||||||||||||||.||| ||||
RBAM_026140__ 1683 CGAGCCGGGACAGGGGACTGTATTTACCGTGACGCTGAAGCGGCAGCCG- 1731
BSNT_04248___ 1725 TGAAAAGTCCGCCTAA 1740
||| ||.|.|
RBAM_026140__ 1732 -GAA------GCGTGA 1740
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