Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04258 and RBAM_026210
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:41
# Commandline: needle
# -asequence dna-align/BSNT_04258___ytvI.1.9828.seq
# -bsequence dna-align/RBAM_026210___ytvI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04258___ytvI-RBAM_026210___ytvI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04258___ytvI-RBAM_026210___ytvI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04258___ytvI
# 2: RBAM_026210___ytvI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1148
# Identity: 835/1148 (72.7%)
# Similarity: 835/1148 (72.7%)
# Gaps: 64/1148 ( 5.6%)
# Score: 2900.0
#
#
#=======================================
BSNT_04258___ 1 GTGAATCAATCTTATATCACTATTTTTTTCAGAACCCTCTTTGTCATA-T 49
|||||.|.....|||...|||.||||||||.|..|.||.|||| || |
RBAM_026210__ 1 GTGAACCCGCACTATGCAACTGTTTTTTTCCGCGCGCTGTTTG---TACT 47
BSNT_04258___ 50 CAATGACCGCAGG-GTCGATAGCT---GCGGCCTATTA---TTCGTTTCC 92
|..|| |.||.|| |.| ||| ||||||..||| .||.|||||
RBAM_026210__ 48 CGCTG-CGGCCGGCGGC----GCTTTAGCGGCCGGTTACGCCTCATTTCC 92
BSNT_04258___ 93 GTTAACTTATCCGTTCCTGATCGCCCTTATTCTTTCTTCAGTGATTCA-T 141
|||||||||||||||.|||||||||||||||||.||.||||.|| ||| |
RBAM_026210__ 93 GTTAACTTATCCGTTTCTGATCGCCCTTATTCTGTCATCAGCGA-TCATT 141
BSNT_04258___ 142 CCTGTTGTCGATTATTTGGACAAAGTGACAGGATTCCCCCGAACGATAAA 191
||.|||||.||.|...||||||||.||||.||..|.|||||..|..|.||
RBAM_026210__ 142 CCCGTTGTTGACTGGCTGGACAAACTGACGGGGATGCCCCGGTCAGTCAA 191
BSNT_04258___ 192 T---GT-----TCTGGGCGTTCTTGCTTTTT-----TTCTGCTCGCAGCC 228
| || |||.|| |||| |||||| ||||.||||..|
RBAM_026210__ 192 TACAGTCATTGTCTTGG---TCTT-CTTTTTGCTTATTCTTCTCGGCG-- 235
BSNT_04258___ 229 TTCGGCGTCCTTACCATTCTGGTAGCCGAAATCGTAACGGGAACAGCCTA 278
||||| ||..||||.||.||.||||||.|..|||||||.|||||
RBAM_026210__ 236 --CGGCG-----ACATTTCTCGTTGCGGAAATCATTTCGGGAACCGCCTA 278
BSNT_04258___ 279 TCTAGCAAAAACGCTGCCTCCGCATATCAGCACGTTTATTTCATATTGCG 328
|||.||.||||||||.|||||.|||||||||.|.|||||..|.|||||||
RBAM_026210__ 279 TCTGGCCAAAACGCTCCCTCCCCATATCAGCGCCTTTATGACGTATTGCG 328
BSNT_04258___ 329 AAAAATTGTTTACAACTCATATTCAGCCGCTCTATAACGAGTTAACTCTT 378
||.|..||||.||..|.|..||||||||..|.||..|||||.|.||..|.
RBAM_026210__ 329 AAGAGCTGTTCACTTCCCGCATTCAGCCATTGTACCACGAGCTGACCGTC 378
BSNT_04258___ 379 TTGTTTCAAGAATTGGAAACGAACCAGCAGGCTTCCATCGTCACTCATAT 428
.|.|||.|.|.|.|||||||.||.||||||||.||||||||.||.|||||
RBAM_026210__ 379 CTATTTAACGGACTGGAAACCAATCAGCAGGCATCCATCGTGACGCATAT 428
BSNT_04258___ 429 CCAGACACTCGGAGATTCTGCCGCTAAAAATGCCGGGCTCCTGCTGTCCC 478
.|||||.|||||.|||.|.||||||||||||||.|||||..||||.||.|
RBAM_026210__ 429 TCAGACCCTCGGTGATACAGCCGCTAAAAATGCGGGGCTGATGCTTTCAC 478
BSNT_04258___ 479 ACATTCTAGAGATGATCCCGA----GATTTTTCGCTCTT-CTTCCCAATA 523
|..||.|.|||.||.|.|||| |||| || ||| ||||||||||
RBAM_026210__ 479 ATCTTTTGGAGCTGGTGCCGAAATGGATT----GC-CTTCCTTCCCAATA 523
BSNT_04258___ 524 CGGCGGCGGTTCTGATTTTTTCTCTTCTGGCAACCTTTTTTATGACAAAG 573
|.||.||.||..|.|||||..|..|.|||||.||.|||||||||||||||
RBAM_026210__ 524 CAGCTGCCGTCTTCATTTTCGCAATGCTGGCGACTTTTTTTATGACAAAG 573
BSNT_04258___ 574 GATTGGCATAAGCTGAAAGCCATGCTTGTTTTAATTCTGCCGGATCGTGT 623
||.||||||||||||||.||..|||||..||..|||||.|||||.||.||
RBAM_026210__ 574 GACTGGCATAAGCTGAAGGCGCTGCTTTATTCCATTCTTCCGGAACGGGT 623
BSNT_04258___ 624 GACAGCTAACAGCAAAG--CG-ATCAGCAGCGAATTAAAAAAAGCAATGA 670
..|.||.||| ||.||| || |||.| |.||..|.||||||||.|||.
RBAM_026210__ 624 TTCGGCAAAC-GCCAAGGCCGTATCGG--GAGAGCTGAAAAAAGCGATGG 670
BSNT_04258___ 671 CTGGTTTTATCAAAGCACAAGCCGTCCTCGT--TTTCATCACGATGGTGA 718
|.|||||.||.||.||.||.|||||.|||.| ||| ||||||||.|.|
RBAM_026210__ 671 CAGGTTTCATTAAGGCGCAGGCCGTGCTCATACTTT--TCACGATGATTA 718
BSNT_04258___ 719 TTGTATTTATCGGCCTTTCTCTCTTAAAGGTTGAACACGCCGCAACAATT 768
||||.||||||||.||||.|||.|||..|.||||.||.||.|||||.||.
RBAM_026210__ 719 TTGTCTTTATCGGACTTTTTCTTTTAGGGATTGAGCATGCGGCAACCATC 768
BSNT_04258___ 769 GCTTTTTTAATCGGGCTTGTAGATCTTCTCCCTTACTTAGGTGCCGGCTC 818
||.|||||.|||||.||.||.||.||.|||||.||..|.||.|||||.||
RBAM_026210__ 769 GCCTTTTTTATCGGCCTGGTGGACCTGCTCCCGTATCTCGGCGCCGGGTC 818
BSNT_04258___ 819 CGTATTTGTGCCCTGGATTTTGTATTTATCGATTACGGGCCAGCTGCCCC 868
.||.|||||.|||||||||.||||||||.|.|||.|.||.|||||.||.|
RBAM_026210__ 819 GGTCTTTGTTCCCTGGATTATGTATTTAGCCATTGCCGGTCAGCTTCCTC 868
BSNT_04258___ 869 AAGCGATCGGAATCGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAG 918
||||||||||..|||||.|..|.||..|.||.|||||.||||||||.|||
RBAM_026210__ 869 AAGCGATCGGTCTCGGTGTTTTATATATTGTGGTTCTCATTCAGCGCCAG 918
BSNT_04258___ 919 CTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGC 968
|||||.|||||.||.||..||||.||.||.|||||..|.||||||||.||
RBAM_026210__ 919 CTGACGGAGCCGAAAATTTTAAGCAAGTCAATCGGACTTGATCCGCTTGC 968
BSNT_04258___ 969 AACGCTCATCGCCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGAC 1018
.||..|.|||||||||||||||||.||||||.|.|||||..|||||||||
RBAM_026210__ 969 GACCTTAATCGCCCTGTTTGCCGGTTTTAAACTGTTCGGAATTTTAGGAC 1018
BSNT_04258___ 1019 TGATTGCGGGACCCGCTGTACTCGTCATCATCCAAGCTTTCATCACAACA 1068
||..||||||.|||||..|.|||||..||||.||.||.||.||||||||.
RBAM_026210__ 1019 TGGCTGCGGGGCCCGCGCTGCTCGTTTTCATTCAGGCCTTTATCACAACG 1068
BSNT_04258___ 1069 GGCGCATTAAAAGAAATATGGTCCTATATCACCGTTCAGCAAAAATAA 1116
|||||.|||||||||||||||.|||||||.||.|||||....||||||
RBAM_026210__ 1069 GGCGCTTTAAAAGAAATATGGGCCTATATTACTGTTCAATCCAAATAA 1116
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