Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04266 and RBAM_026250

See Amino acid alignment / Visit BSNT_04266 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:42
# Commandline: needle
#    -asequence dna-align/BSNT_04266___accA.1.9828.seq
#    -bsequence dna-align/RBAM_026250___accA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04266___accA-RBAM_026250___accA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04266___accA-RBAM_026250___accA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04266___accA
# 2: RBAM_026250___accA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 980
# Identity:     795/980 (81.1%)
# Similarity:   795/980 (81.1%)
# Gaps:           4/980 ( 0.4%)
# Score: 3211.0
# 
#
#=======================================

BSNT_04266___      1 GTGGCTCCAAGATTAGAATTTGAAAAACCGGTGATTGAACTGCAAACCAA     50
                     ||||||.||||||||||||||||||||||.||||||||||||||.||.||
RBAM_026250__      1 GTGGCTGCAAGATTAGAATTTGAAAAACCAGTGATTGAACTGCAGACGAA     50

BSNT_04266___     51 AATCGCCGAACTAAAAAAATTCACCCAAGATTCCGATATGGATCTAAGTG    100
                     ||||||||||||.||||||||||||||||||||.||.||||||.||||.|
RBAM_026250__     51 AATCGCCGAACTGAAAAAATTCACCCAAGATTCGGAGATGGATTTAAGCG    100

BSNT_04266___    101 CGGAAATCGAACGGCTCGAAGACCGTCTC-GCTAAGCTTCAGGATGATAT    149
                     |.|||||||.|.||||.|||||.||.||| || ||||||||||||||.||
RBAM_026250__    101 CTGAAATCGCAAGGCTTGAAGAACGGCTCAGC-AAGCTTCAGGATGAGAT    149

BSNT_04266___    150 TTACAAAAATCTGAAGCCATGGGACCGGGTTCAAATCGCGCGTCTGGCGG    199
                     |||.|||||.||||||||.||||||.|.||.||.|||||.||.||..|.|
RBAM_026250__    150 TTATAAAAACCTGAAGCCGTGGGACAGAGTGCAGATCGCACGCCTTCCCG    199

BSNT_04266___    200 ACCGTCCGACAACTCTTGATTATATCGAACACCTGTTTACCGACTTTTTT    249
                     ||||.|||||.||.||||||||.||..||.||||||||||||||||||||
RBAM_026250__    200 ACCGGCCGACGACGCTTGATTACATTCAATACCTGTTTACCGACTTTTTT    249

BSNT_04266___    250 GAATGTCACGGAGACAGAGCGTACGGGGACGATGAAGCCATTGTCGGCGG    299
                     ||.||.||||||||||||.|.|||||.||.||||..||.|||||||||||
RBAM_026250__    250 GAGTGCCACGGAGACAGAACATACGGAGATGATGCGGCGATTGTCGGCGG    299

BSNT_04266___    300 GATTGCGAAGTTCCACGGCCTCCCTGTAACGGTAATCGGGCATCAGCGCG    349
                     ..|.||.||.|..||||||.|.||.||.||.||.|||||.||||||||||
RBAM_026250__    300 AGTCGCCAAATATCACGGCATGCCGGTCACCGTTATCGGACATCAGCGCG    349

BSNT_04266___    350 GCAAAGACACGAAGGAAAACCTAGTCCGCAATTTTGGGATGCCGCATCCA    399
                     |.|||||||||||.||||||||.|||||||||||.||||||||.||.||.
RBAM_026250__    350 GAAAAGACACGAAAGAAAACCTTGTCCGCAATTTCGGGATGCCTCACCCT    399

BSNT_04266___    400 GAAGGCTACAGAAAAGCGCTTCGTCTGATGAAACAGGCTGACAAATTTAA    449
                     ||.||||||.|.||||||||||||||.|||||.|||||.||.||.||.||
RBAM_026250__    400 GAGGGCTACCGCAAAGCGCTTCGTCTCATGAAGCAGGCGGATAAGTTCAA    449

BSNT_04266___    450 CAGACCAATTATCTGTTTTATTGATACGAAGGGGGCATACCCCGGACGAG    499
                     |.|.||.||||||||.||.||.||.||||||||.||.|||||.||...||
RBAM_026250__    450 CCGCCCGATTATCTGCTTCATCGACACGAAGGGAGCGTACCCGGGTAAAG    499

BSNT_04266___    500 CAGCTGAAGAAAGAGGACAAAGTGAAGCTATTGCCAAAAACCTGTTTGAG    549
                     |.||.||.|||.|.||||||||||||||.||.|||||.||||||||.|||
RBAM_026250__    500 CGGCGGAGGAACGGGGACAAAGTGAAGCCATCGCCAAGAACCTGTTCGAG    549

BSNT_04266___    550 ATGGCCGGCCTTCGAGTGCCTGTTATCTGCATCGTCATCGGTGAAGGCGG    599
                     |||||||||||...|||||||||..|.||.|||||||||||.||||||||
RBAM_026250__    550 ATGGCCGGCCTGACAGTGCCTGTCGTTTGTATCGTCATCGGGGAAGGCGG    599

BSNT_04266___    600 AAGCGGCGGAGCCCTTGGTCTGGGTGTAGGTAATCACTTGCATATGCTGG    649
                     .|||||.||.||.||||...|.|||||.||.||.|.|.|||..|||||.|
RBAM_026250__    600 CAGCGGAGGCGCGCTTGCATTAGGTGTGGGCAACCGCATGCTGATGCTTG    649

BSNT_04266___    650 AAAACTCTACTTATTCTGTTATTTCTCCGGAAGGTGCCGCGGCACTTTTA    699
                     |.|||||.||.|||||.|||||||||||.|||||.|||||..|..||||.
RBAM_026250__    650 AGAACTCGACGTATTCCGTTATTTCTCCTGAAGGAGCCGCATCCATTTTG    699

BSNT_04266___    700 TGGAAGGACTCCAGTCTTGCTAAAAAAGCAGCAGAAACAATGAAAATCAC    749
                     |||||.||||||||.|||||.||||||||.||.|||.|.|||||.||.||
RBAM_026250__    700 TGGAAAGACTCCAGCCTTGCGAAAAAAGCGGCCGAATCCATGAAGATTAC    749

BSNT_04266___    750 TGCGCCGGATTTAAAAGAATTAGGTATTATAGATCATATGATTAAAGAAG    799
                     ||||||.||||||..|||||||||.|||||.||..|||||||||||||||
RBAM_026250__    750 TGCGCCCGATTTATTAGAATTAGGAATTATTGACGATATGATTAAAGAAG    799

BSNT_04266___    800 TAAAAGGCGGAGCGCACCATGATGTGAAGCTGCAGGCAAGCTATATGGAC    849
                     |.||.||||||||.|||||||||.|.||||.||||||..||||.||.|||
RBAM_026250__    800 TGAAGGGCGGAGCTCACCATGATATCAAGCAGCAGGCGGGCTACATTGAC    849

BSNT_04266___    850 GAAACCCTTAAACAATCGTTAAAAACTTTGCTGAAGCTGAGCGAAGAAGA    899
                     |..|..||||||.||.||||||||.||.|.||..|..|||.||..|||||
RBAM_026250__    850 GGTATTCTTAAAGAAACGTTAAAATCTCTTCTTCAATTGAACGCCGAAGA    899

BSNT_04266___    900 ATT-AGTTCAGCAGCGCTATGAAAAATATAAAGCAATTGGCAAAGTCTCG    948
                     ||| |..||| |||||.||||||||||||||||||||.||.|||||.|||
RBAM_026250__    900 ATTGATCTCA-CAGCGATATGAAAAATATAAAGCAATCGGGAAAGTTTCG    948

BSNT_04266___    949 GTTGAAGATCAATATATCGGGGTAAACTAA    978
                     |||||.||||||||||||||||||||||.|
RBAM_026250__    949 GTTGAGGATCAATATATCGGGGTAAACTGA    978


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