Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04296 and RBAM_026430
See
Amino acid alignment /
Visit
BSNT_04296 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:44
# Commandline: needle
# -asequence dna-align/BSNT_04296___ytfJ.1.9828.seq
# -bsequence dna-align/RBAM_026430___ytfJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04296___ytfJ-RBAM_026430___ytfJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04296___ytfJ-RBAM_026430___ytfJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04296___ytfJ
# 2: RBAM_026430___ytfJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 458
# Identity: 354/458 (77.3%)
# Similarity: 354/458 (77.3%)
# Gaps: 19/458 ( 4.1%)
# Score: 1383.0
#
#
#=======================================
BSNT_04296___ 1 ATGGCAGACCATCCCATCCAAGGTTTAATGAAAACCGCAATGGAAAACTT 50
|||||||||||||||||.||||||||||||||||||||.||||||||.||
RBAM_026430__ 1 ATGGCAGACCATCCCATTCAAGGTTTAATGAAAACCGCTATGGAAAATTT 50
BSNT_04296___ 51 GAAGGAAATGATTGATGTTAACACCATCATCGGAGATCCAGTAGAAACGC 100
.||.|||||||||||.||.||.||.||||||||.|||||.||.|||||||
RBAM_026430__ 51 AAAAGAAATGATTGACGTGAATACAATCATCGGCGATCCTGTTGAAACGC 100
BSNT_04296___ 101 CTGATGGAAGTGTGATTTTAACTGTTTCTAAAGTTGGATTTGGATTCGCC 150
||||.||.||.||.||.|||||.|||||.||.||.||.||.|||||.||.
RBAM_026430__ 101 CTGACGGCAGCGTAATCTTAACGGTTTCAAAGGTCGGCTTCGGATTTGCG 150
BSNT_04296___ 151 GCAGGCGGAAGCGAGTTTGGCGGAAAGCCGGCCGAAAAGAAATCGGAAGA 200
||.|||||||||||||||||.|||||||||||.|||||.|.|.|.||.||
RBAM_026430__ 151 GCCGGCGGAAGCGAGTTTGGAGGAAAGCCGGCTGAAAAAAGAACCGATGA 200
BSNT_04296___ 201 CGATGAGACAAGAGAACAGAAACTTCCTTTCGGAGGCGGAAGCGGGGGCG 250
.|||||.|.||.|||.|||||.||.||.|||||.|||||||||||.||||
RBAM_026430__ 201 TGATGAAAGAAAAGAGCAGAAGCTCCCGTTCGGCGGCGGAAGCGGCGGCG 250
BSNT_04296___ 251 GTGTGTCCATTACGCCGATCGCGTTTTTAATTGTCGGATCGACAGGCATC 300
|.||.||||||||||||||.||||||.|.||.||||||.|.|..|||.|.
RBAM_026430__ 251 GAGTATCCATTACGCCGATTGCGTTTCTGATCGTCGGAACAAACGGCGTG 300
BSNT_04296___ 301 AGAATGCTTCATTTAGATGAAAATACCCATTTAATAGAGAAAATTTTAGA 350
.|.||||||||||||||.|||||.||||||.|.||.||.|||.|.|||||
RBAM_026430__ 301 CGCATGCTTCATTTAGACGAAAACACCCATCTGATTGATAAACTGTTAGA 350
BSNT_04296___ 351 CGCAGCCCCTCAAACACTCGAACGCATCCAGCAAATGTTCAAGAAAAATA 400
..|.||.||||||||..|.||||||||||||||.|||||.||.||.|||.
RBAM_026430__ 351 TTCCGCGCCTCAAACGATTGAACGCATCCAGCATATGTTTAAAAAGAATG 400
BSNT_04296___ 401 ACAAGAACCAAGGCCAGGGCCAAAATCAAAACCAAATGAAC-AATAT-GA 448
|.| ||||||.|..|||| |||.|||| .|||| ||
RBAM_026430__ 401 AAA------AAGGCCGGAACCAA----------AAAAGAACGGATATCGA 434
BSNT_04296___ 449 ATTATTAA 456
.||||.|
RBAM_026430__ 435 TTTATAA- 441
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.