Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04305 and RBAM_026490
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:45
# Commandline: needle
# -asequence dna-align/BSNT_04305___ytcI.1.9828.seq
# -bsequence dna-align/RBAM_026490___ytcI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04305___ytcI-RBAM_026490___ytcI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04305___ytcI-RBAM_026490___ytcI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04305___ytcI
# 2: RBAM_026490___ytcI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1605
# Identity: 1245/1605 (77.6%)
# Similarity: 1245/1605 (77.6%)
# Gaps: 33/1605 ( 2.1%)
# Score: 4767.5
#
#
#=======================================
BSNT_04305___ 1 GTGTTAAAACGTGAAGATTTAATTGCCCCTATGCAATATAATTTAGTGAA 50
|||||||||||.|||||||||||.|||||.|.|.|.|||||..|.||.||
RBAM_026490__ 1 GTGTTAAAACGAGAAGATTTAATCGCCCCAAAGAACTATAACCTTGTAAA 50
BSNT_04305___ 51 TGAAATGGAAAAGTTCAGTGCCGCTGGACAA----AAAACCGCTCTTCTG 96
||||||.|||||||||| ||||.| .||| ||.|.|||.|||.|.
RBAM_026490__ 51 TGAAATCGAAAAGTTCA--GCCGTT--CCAAAGAGAAGAACGCGCTTATA 96
BSNT_04305___ 97 TGGGAGG-----ACGAGTCGGGTAAGCAAGAATCTTGGTCGTATGAAAAG 141
|||||.| || ||.| ||.|||.||| || |||.||||||||||.
RBAM_026490__ 97 TGGGAAGATCAAAC-AGGC-GGAAAGAAAG--TC-TGGACGTATGAAAAA 141
BSNT_04305___ 142 CTGATGGAAGAAACAAATAAAATCGGAG-CGGCCTTAGCTGA----TCTT 186
.|||||||||||||.||||||||||||| |.|| |||| |||.
RBAM_026490__ 142 TTGATGGAAGAAACGAATAAAATCGGAGCCCGC-----CTGAAAGGTCTC 186
BSNT_04305___ 187 GGATTTAAAAAGGGAGACAAGCTGATTGTAATGGTTCCGCGGGTGCTTGA 236
||||||.||||.||.||.|||||||||||.|||||||||.|.||||||||
RBAM_026490__ 187 GGATTTGAAAAAGGCGATAAGCTGATTGTCATGGTTCCGAGAGTGCTTGA 236
BSNT_04305___ 237 AGCCTATGCTGTTTATTTGGCTATCCTGAAATCAGGAATGGTTGTCATTC 286
|||.|||||.||||||||.||.|||.|.|||.|.||.|||||.|||||||
RBAM_026490__ 237 AGCGTATGCCGTTTATTTAGCGATCTTAAAAGCGGGGATGGTCGTCATTC 286
BSNT_04305___ 287 CGTGCTCCGAAATGCTTCGCGCGAAAGATCTTGAATACCGGATTGAACAT 336
|.|||||.||||||||.|||||.|||||.||||||||||||||..||||.
RBAM_026490__ 287 CTTGCTCGGAAATGCTGCGCGCCAAAGACCTTGAATACCGGATCAAACAC 336
BSNT_04305___ 337 GCAGAGGTAAAAGGCGCTATCGTCTACTCAGAATTTATTGGCGCTTTCCG 386
||.||.||.||||||||||||||.||..|...||||||...|||.||...
RBAM_026490__ 337 GCCGAAGTGAAAGGCGCTATCGTTTATCCTTCATTTATAAACGCGTTTGA 386
BSNT_04305___ 387 GGATGTCAGTACGACTGACAAACTGATTACACTGTCTATTGGTGAAAATG 436
.||.||.|.| ||.||..|.|||.|.|||.||||.||.|||||||||.
RBAM_026490__ 387 CGAGGTGAAT---ACCGAGCAGCTGGTGACATTGTCAATCGGTGAAAATA 433
BSNT_04305___ 437 ATGCCGACTGGAAAAACCTCTTATCAATTGAAGCGGACGGAAGCCA-ATT 485
|||.||.|||||||||||||.||.|.|||||||||||||| ||.|| .||
RBAM_026490__ 434 ATGTCGGCTGGAAAAACCTCCTAACGATTGAAGCGGACGG-AGACAGTTT 482
BSNT_04305___ 486 TAAAACAGCTGACACAACAAGAGATGATATGGCTTTCTTATCTTATACAT 535
|.||||||||||.|||||||||||.||.|||||.||.||.||.|||||.|
RBAM_026490__ 483 TCAAACAGCTGATACAACAAGAGAAGACATGGCGTTTTTGTCCTATACTT 532
BSNT_04305___ 536 CCGGGACAACAGGTCAGCCGAAAGGTGTTGTACATACACATGGATGGGCA 585
|.||.||.||.||.|||||.|||||.||||||||||||||.||.|||||.
RBAM_026490__ 533 CAGGCACGACCGGCCAGCCTAAAGGCGTTGTACATACACACGGCTGGGCC 582
BSNT_04305___ 586 TTTGCTCATTTAAAAACTTCTGCCGGCGCTTGGCTTGATATTTCTGAAAA 635
|||||.|||||||||||.||.|||||.||.|||||.||||||||||||.|
RBAM_026490__ 583 TTTGCCCATTTAAAAACATCAGCCGGTGCATGGCTGGATATTTCTGAAGA 632
BSNT_04305___ 636 GGATATCGTCTGGGCAACTGCTGCCCCTGGCTGGCAAAAGTGGGTATGGA 685
.||||..||.|||||.||.||.||.||.||||||||.||.|||||.||||
RBAM_026490__ 633 CGATACAGTGTGGGCCACCGCGGCGCCCGGCTGGCAGAAATGGGTGTGGA 682
BSNT_04305___ 686 GTCCGTTTTTAGCGGTGCTTGGCAGCGGAGCAACCGGTTTTGTGTACCAC 735
|.|||.|..|.||..|.||.||.|||||.||.||.||..|..|.||.|||
RBAM_026490__ 683 GCCCGCTGCTCGCAATTCTGGGAAGCGGCGCGACAGGAGTCATTTATCAC 732
BSNT_04305___ 736 GGCAGATTCAAAGCAGAAAAATATCTAGAGCTTTTAAATCGCTACAAAAT 785
|||||||||||.||..|.|..|||.|||||||..|..|.|||.|..||.|
RBAM_026490__ 733 GGCAGATTCAACGCCAAGACGTATTTAGAGCTGCTGGAGCGCCATCAAGT 782
BSNT_04305___ 786 CAATGTTTTCTGCTGCACGCCTACAGAATACCGCTTAATGGCGAAGGTTG 835
.|||||.||||||||.||.||.||.|||||||||.|.|||||.||.||.|
RBAM_026490__ 783 AAATGTCTTCTGCTGTACCCCGACGGAATACCGCCTGATGGCAAAAGTGG 832
BSNT_04305___ 836 AAGGCTTGGACCGTTTTGATCTTTCTGCCCTGCACAGCGCTGTTTCCGCA 885
|.|..||||||...|.|||||||||||||||.||||||||.|||||.||.
RBAM_026490__ 833 AGGAGTTGGACAAATATGATCTTTCTGCCCTTCACAGCGCAGTTTCTGCG 882
BSNT_04305___ 886 GGTGAGCCGCTCAACCGTGAAGTCATTGATGTTTTCCAAAAGCACTTTGG 935
||||||||..|.|||||.|||||||||||.||.||||..|||||.|||||
RBAM_026490__ 883 GGTGAGCCATTAAACCGGGAAGTCATTGACGTATTCCGGAAGCATTTTGG 932
BSNT_04305___ 936 CATTAAGGTACGGGACGGATATGGCCAAACAGAAAGCACGCTTTTGGTTG 985
||||||.||..|.||||||||.||||||||.||.|||||.||.||.||.|
RBAM_026490__ 933 CATTAAAGTGAGAGACGGATACGGCCAAACGGAGAGCACCCTGTTAGTCG 982
BSNT_04305___ 986 GTGTTTTGAAAGATACGCCTATTAAACCGGGAAGCATGGGAAAACCGACA 1035
|.||..||||.||||.|..||||||.||||||||||||||.||||||||.
RBAM_026490__ 983 GCGTCCTGAAGGATATGGATATTAAGCCGGGAAGCATGGGCAAACCGACC 1032
BSNT_04305___ 1036 CCGGGAAATCAGGTGGAGATCATAAATGAAGACGGTGAAATCTGCAAACC 1085
||.|||||||||||||||||.|||||.||..|.||.|||||.|||.||.|
RBAM_026490__ 1033 CCCGGAAATCAGGTGGAGATTATAAACGATAAAGGCGAAATATGCGAAAC 1082
BSNT_04305___ 1086 TGGTGAGGTTGGCGATATCGCTGTTCACCTCAGTACGCCTGCGCTCTTTA 1135
.||.||....|||||||||||.||.||..|.||.||.||.||..|.||.|
RBAM_026490__ 1083 AGGCGAAACGGGCGATATCGCCGTGCATTTGAGCACACCGGCCTTATTCA 1132
BSNT_04305___ 1136 AAGAGTATTTTAAAGATCCGGAAAGAATGAAAACACAAATTCGCGGCGAT 1185
|.||.||||.|||||||||.|||||||.|||||..||.||||||||.|||
RBAM_026490__ 1133 AGGAATATTATAAAGATCCCGAAAGAACGAAAAAGCAGATTCGCGGAGAT 1182
BSNT_04305___ 1186 TATTTCCTAACGGGAGACAGAGCAAGAAAAGATGAGGAAGGTTACTTCTG 1235
|||||.||.||.||||||.|.||.|.||||||.||.||.||.|||||.||
RBAM_026490__ 1183 TATTTTCTTACAGGAGACCGCGCGAAAAAAGACGAAGACGGCTACTTTTG 1232
BSNT_04305___ 1236 GTTTGAAAGCCGAAATGACGATATTATTATCAGCTCCGGCTATACGATCG 1285
||||||.|||||.|||||.||.|||||..||||||||||.|||||.||||
RBAM_026490__ 1233 GTTTGAGAGCCGCAATGATGACATTATCGTCAGCTCCGGATATACAATCG 1282
BSNT_04305___ 1286 GGCCTTTCGAGGTGGAAGACGCGCTTGTTAAGCACCCAGAAGTAAAAGAA 1335
|||||||.||.||.||.||||||||.||.|||||.||.|||||.||||||
RBAM_026490__ 1283 GGCCTTTTGAAGTAGAGGACGCGCTCGTGAAGCATCCGGAAGTGAAAGAA 1332
BSNT_04305___ 1336 TGTGCTGTTGTCGCAAGCCCTGATGAAATCAGAGGCTCCATCGTAAAGGC 1385
|||||.||.||.||.|||||.||||||||||||||.||.||||||||.||
RBAM_026490__ 1333 TGTGCCGTCGTGGCGAGCCCGGATGAAATCAGAGGTTCAATCGTAAAAGC 1382
BSNT_04305___ 1386 ATATGTTGTCCTGCAAAATCATGAAAAACGCAGTGATGAGCTTGTCAAAA 1435
.|||||.||..|.|||.|..|||||||.||||||||.||.|||||||||.
RBAM_026490__ 1383 TTATGTCGTTTTACAAGACGATGAAAAGCGCAGTGACGAACTTGTCAAAG 1432
BSNT_04305___ 1436 TGCTGCAAAACCATGTGAAGACGATTACCGCTCCATACAAATATCCTAGA 1485
..|||||||||||.||.||.||||||||.||.||.|||||||||||.|||
RBAM_026490__ 1433 AACTGCAAAACCACGTAAAAACGATTACGGCGCCTTACAAATATCCGAGA 1482
BSNT_04305___ 1486 GAAATTGAATTTGTGGAAAGCCTGCCGAAAACGGCTTCTGCAAAAATCAG 1535
||||||||.|||||.||||||||||||||||||||.||.|||||||||||
RBAM_026490__ 1483 GAAATTGAGTTTGTCGAAAGCCTGCCGAAAACGGCGTCCGCAAAAATCAG 1532
BSNT_04305___ 1536 ACGAGTGGAATTAAGAAAACGTGAAGAACAGCTCAAAGCCAATAAAAAGG 1585
|||.|||||..|.|||.|.||||||||||.|||.||.||..|||||||.|
RBAM_026490__ 1533 ACGTGTGGAGCTGAGACAGCGTGAAGAACGGCTGAAGGCTGATAAAAAAG 1582
BSNT_04305___ 1586 CGTAA 1590
|.|||
RBAM_026490__ 1583 CATAA 1587
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