Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04308 and RBAM_026520

See Amino acid alignment / Visit BSNT_04308 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:46
# Commandline: needle
#    -asequence dna-align/BSNT_04308___nifZ.1.9828.seq
#    -bsequence dna-align/RBAM_026520___nifZ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04308___nifZ-RBAM_026520___nifZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04308___nifZ-RBAM_026520___nifZ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04308___nifZ
# 2: RBAM_026520___nifZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1176
# Identity:     857/1176 (72.9%)
# Similarity:   857/1176 (72.9%)
# Gaps:          60/1176 ( 5.1%)
# Score: 3029.0
# 
#
#=======================================

BSNT_04308___      1 ATGATATATTTAGATAATAGTTCAACGACGAAGCCTTACGATGAAGTCTT     50
                     ||||||||||||||.||.||.||||||||..||||.||.||.||.||.||
RBAM_026520__      1 ATGATATATTTAGACAACAGCTCAACGACCGAGCCGTATGAAGAGGTATT     50

BSNT_04308___     51 GAACGTATATGAACAGACAAGCAGCCGATACTTTGGCAATCCTTCATCTT    100
                     |.|.||.||..|||||||.||||||||.||.||.|||||||||||.|||.
RBAM_026520__     51 GGATGTGTACAAACAGACGAGCAGCCGTTATTTCGGCAATCCTTCGTCTC    100

BSNT_04308___    101 TGCACCGATATGGAGCCGAAACGGAACAGCTGCTTCAAGCAGCCAAAAAT    150
                     |||||||.|..|||.|.||.|||||||||||.|||.||||.|||....|.
RBAM_026520__    101 TGCACCGGTTAGGAACTGAGACGGAACAGCTCCTTGAAGCGGCCGCTCAG    150

BSNT_04308___    151 CAAATCAAAAGGTCCTTAGGCCTAAAAAAATATGATATTGTATTTACATC    200
                     |||||.||||...||||..|..|||||||.||||||||||||||||||||
RBAM_026520__    151 CAAATAAAAAAAACCTTGCGTTTAAAAAATTATGATATTGTATTTACATC    200

BSNT_04308___    201 AGGCGCCACAGAAGCCAATAATGCGGCTTTAAAAGGAGCGGCTTTGTCAA    250
                     ||||||.||.|||||.|||||.||.||.|||||.|||||.||.|.|.|||
RBAM_026520__    201 AGGCGCGACTGAAGCGAATAACGCTGCGTTAAAGGGAGCAGCCTGGGCAA    250

BSNT_04308___    251 AGATAAAAACAGGCAAACATATCATTGCCACTTCTATTGAACATCCATCC    300
                     |.||.|..|.|||.|.||||||||||||..|..|.|||||.|||||.||.
RBAM_026520__    251 ACATGAGTAAAGGGAGACATATCATTGCTTCGGCGATTGAGCATCCTTCT    300

BSNT_04308___    301 GTTACGGAATCGTTAGAACAGCTGAAAGAGTTGTTCGGGTTTGATATCAC    350
                     ||.|||||..||.|.||.|||||||.||||.|||||||.|||||..||||
RBAM_026520__    301 GTGACGGAGACGCTTGATCAGCTGACAGAGCTGTTCGGCTTTGAAGTCAC    350

BSNT_04308___    351 TTATCTTTCTGTGAATGAAGACGGATTTGTTTCTATTG-AAGATCTAAAA    399
                     .||||||.|.|...||.||.||||.||.||.||| ||| ||||..|.|||
RBAM_026520__    351 ATATCTTCCGGCCGATCAAAACGGCTTCGTCTCT-TTGAAAGACGTCAAA    399

BSNT_04308___    400 GCAGCCATCCGTCCCGATACCGTGCTTGTCAGCATGATGCATGTGAACAA    449
                     .|.||.|||.|.||.|||||..|..|.||||||.|.||||||||.||.||
RBAM_026520__    400 TCGGCTATCAGGCCGGATACGATAATCGTCAGCGTCATGCATGTCAATAA    449

BSNT_04308___    450 TGAAGTCGGTTCCGTGCAGCC-------GATTGAAGCGGCAGGGGAAGTG    492
                     .||||||||.|||.|.|||||       ||   ||.||||.||    .|.
RBAM_026520__    450 CGAAGTCGGCTCCATTCAGCCCGTAAAGGA---AATCGGCGGG----TTT    492

BSNT_04308___    493 CTGAAGAAGCACCCGAACATTTTGTTCCACGTCGATTATGTGCAGGGCAT    542
                     .|||||.||||||.|||.|||.||||.||.||.|||.|||||||||||||
RBAM_026520__    493 TTGAAGCAGCACCGGAATATTCTGTTTCATGTTGATCATGTGCAGGGCAT    542

BSNT_04308___    543 CTATAAAGTGCCCTTGGCAATTGAAAAGGCCGGCATTGATCTATGTTCAA    592
                     ..|||||||.||..||.|.||.|||.|.||.||||||||.||.||..|..
RBAM_026520__    543 TCATAAAGTTCCGCTGTCTATAGAAGAAGCGGGCATTGACCTTTGCACCG    592

BSNT_04308___    593 TTTCGGGGCATAAATTTCACGGCCTAAAGGGGACAGGCGCACTTATTGTA    642
                     ||||.||||||||.|||||||||.||||.||||||||.||.|||||.||.
RBAM_026520__    593 TTTCAGGGCATAAGTTTCACGGCTTAAAAGGGACAGGAGCGCTTATCGTC    642

BSNT_04308___    643 AAAGAGGGAACACGCCTTATTCCGCTCATAACGGGAGGCTCTCAGCAAAA    692
                     |||.|.|||||.||.||.||||||||.||.|||||.|||||.||||||||
RBAM_026520__    643 AAAAAAGGAACGCGGCTCATTCCGCTTATCACGGGCGGCTCGCAGCAAAA    692

BSNT_04308___    693 AGGCATACGGGCCGGAACAGAACATACTGCTGGTGCGGTTTCGCTTGCCA    742
                     ||||.|.||.||||||||.|||||.||.||.||.||.|||||.|||||.|
RBAM_026520__    693 AGGCGTCCGAGCCGGAACGGAACACACGGCAGGCGCCGTTTCCCTTGCGA    742

BSNT_04308___    743 AGGCCATTAATCTTGCCTCTGC-TGATTTTGACACACGGCTT--------    783
                     |.||.||.||||||.||.| || |||..|..||...||||||        
RBAM_026520__    743 AAGCGATCAATCTTTCCGC-GCGTGACATGAACGAGCGGCTTTCTTCCGT    791

BSNT_04308___    784 -GACACGATGACTGCCGCAAAGGAAT-TGTTTATGAAAAGGCTGAGTGAA    831
                      ||      |.|||||    |.|||| .|.|.|||.||||||||||.|..
RBAM_026520__    792 GGA------GGCTGCC----AAGAATGCGCTCATGGAAAGGCTGAGCGGG    831

BSNT_04308___    832 ATTGAGGGCGTCGTTATCAACACGC---CTCAAATGAATAGCGCGCCGCA    878
                     |..||.||.|||||.||||||||.|   ||.||   ||.|||||||||||
RBAM_026520__    832 ACGGACGGGGTCGTCATCAACACCCCCGCTGAA---AACAGCGCGCCGCA    878

BSNT_04308___    879 CATTATTAATTTCTCTGTACCGGGGATTAAAGCGGAAGTGCTTTTACACA    928
                     .||.||||||||.||.||.|||||..|.||.|||||||||||.||.||||
RBAM_026520__    879 TATCATTAATTTTTCCGTTCCGGGCGTGAAGGCGGAAGTGCTGTTGCACA    928

BSNT_04308___    929 TGCTTGAGGAACA--GGATATATTCGTCTCCACAACATCGGCTTGCTCGG    976
                     |||||||||||.|  |.||||||  |||||||||||.|||||.||.||||
RBAM_026520__    929 TGCTTGAGGAAAAAGGAATATAT--GTCTCCACAACCTCGGCATGTTCGG    976

BSNT_04308___    977 CAAAAGAACATAAGCCCAGCAAGGTTCTCTTAGAGATGGGCAAAGGAGAG   1026
                     |||.|||.||.||.||.|||...||||||.|..|||||...|||||.||.
RBAM_026520__    977 CAAGAGAGCACAAACCGAGCCGTGTTCTCCTGCAGATGAATAAAGGCGAA   1026

BSNT_04308___   1027 CAGATTGCCGGAAGCAGCATCAGAATCAGTTTAAATTACAGCCAGACAAG   1076
                     ||||||||...|||||||||.|||.||||..|.||.|.||||||.|| .|
RBAM_026520__   1027 CAGATTGCATCAAGCAGCATAAGAGTCAGCCTGAACTTCAGCCATAC-GG   1075

BSNT_04308___   1077 CGATGTGGCA-----GAACCGTTTATGAACGCGCTTCGT-CCTGGTATCA   1120
                     |    ||.||     ||.|||||||||..||||| |.|| ||.|.|.|..
RBAM_026520__   1076 C----TGACATCACGGAGCCGTTTATGGCCGCGC-TGGTGCCGGCTGTTC   1120

BSNT_04308___   1121 AAAAATTAAGGGAAATGATGAGGTAG   1146
                     |||||.|||...||||||||||||||
RBAM_026520__   1121 AAAAACTAAAAAAAATGATGAGGTAG   1146


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.