Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04313 and RBAM_026550

See Amino acid alignment / Visit BSNT_04313 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:46
# Commandline: needle
#    -asequence dna-align/BSNT_04313___hisJ.1.9828.seq
#    -bsequence dna-align/RBAM_026550___hisJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04313___hisJ-RBAM_026550___hisJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04313___hisJ-RBAM_026550___hisJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04313___hisJ
# 2: RBAM_026550___hisJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 882
# Identity:     573/882 (65.0%)
# Similarity:   573/882 (65.0%)
# Gaps:         144/882 (16.3%)
# Score: 1906.0
# 
#
#=======================================

BSNT_04313___      1 ATGCAAAAGCGAGACGGACATATTCACACACCATTTTGCCCTCACGGCTC     50
                     |||.||||.|||||||..|||||.|||||.||.|||||||||||||||||
RBAM_026550__      1 ATGGAAAAACGAGACGCTCATATCCACACCCCTTTTTGCCCTCACGGCTC     50

BSNT_04313___     51 CAATGACACACTCAGACAATATGCAGAAGAAGCCTTAAAAAAAGGGTTCG    100
                     .||.||..|.||.|.||||||||..|||.|.|||.|..|||.|||.||.|
RBAM_026550__     51 GAAGGATGCGCTGAAACAATATGTCGAAAAGGCCCTGGAAAGAGGCTTTG    100

BSNT_04313___    101 AATCGATTACTTTTACCGAACACGCCCCATTGCCGCCCTCTTTTACCGAT    150
                     |.|||||.||.|||||.||.||||||||..|.||.||.||.|||...|||
RBAM_026550__    101 ACTCGATCACATTTACAGAGCACGCCCCCCTTCCTCCGTCATTTCAAGAT    150

BSNT_04313___    151 CCCACGCCGCTGAAAGACAGCGCGATGG------------CGCAAGCTTC    188
                     |||...|||||..|.|||||||||||||            .|.|.|.||.
RBAM_026550__    151 CCCGTACCGCTTCAGGACAGCGCGATGGATCTCAGACAGATGGAGGTTTA    200

BSNT_04313___    189 TTTGGAAC-GCTATATTCA----TGAAATTTCCGGATTAAAAAAAGAATA    233
                     ||||||.| |||   .|||    ||              |||||.|||||
RBAM_026550__    201 TTTGGAGCGGCT---GTCACAGCTG--------------AAAAAGGAATA    233

BSNT_04313___    234 TCG-CGGACAGCTTAGCATACGGACAGGGCTTGAAGTCGATTATATCGCT    282
                      || .|||||..|.|||||.|.|||.||.||||||..|||||.||||.|.
RBAM_026550__    234 -CGATGGACAAATCAGCATTCTGACTGGACTTGAAACCGATTTTATCACA    282

BSNT_04313___    283 GAATTTGAAGACGAAATTACATTATTCCTAGACACATACGGGCCATATTT    332
                     |..|.||||||.||||...|....||.||..||||.|||||.||.|...|
RBAM_026550__    283 GGGTATGAAGAGGAAACCGCGGCGTTTCTGAACACGTACGGCCCCTCACT    332

BSNT_04313___    333 AGATGACAGCATCTTATCCGTTCATTTTTTGCGCACAGACTCTTCCTATC    382
                     .||||||.||||.||||||||||||||||||...||.|.|.|.||.|||.
RBAM_026550__    333 GGATGACGGCATTTTATCCGTTCATTTTTTGAAAACCGGCCCGTCTTATA    382

BSNT_04313___    383 TATGCCTTGATTATGACGAGCATACCTTCAAAGAGCTGATTTCAGC----    428
                     |||||||.||||.|||||||||..||             |||||||    
RBAM_026550__    383 TATGCCTAGATTTTGACGAGCACGCC-------------TTTCAGCAGCT    419

BSNT_04313___    429 ---------CTGCGGAAGCATTGAAGCGGTATATGAACAATATT-----A    464
                              ||.|||||||||||||||.||||||||||||||.|     |
RBAM_026550__    420 TGCCGACCACTTCGGAAGCATTGAAGCCGTATATGAACAATACTATGAAA    469

BSNT_04313___    465 CCGGAGTATCTATTCTTCCATTGTAGCATCTCTCGGCGTTTATAAGCCAA    514
                     |||     |.|||||||||||||||.||.|.||||||...|.||||||||
RBAM_026550__    470 CCG-----TGTATTCTTCCATTGTAACACCGCTCGGCCCCTTTAAGCCAA    514

BSNT_04313___    515 AAAGAGTCGGTCACATCACACTCGTCCAAAAATTCATCAAG-----CTGT    559
                     ||.|.|||||.||.|||||.||||||.||||||||     |     ||.|
RBAM_026550__    515 AACGGGTCGGCCATATCACGCTCGTCAAAAAATTC-----GCGCGCCTTT    559

BSNT_04313___    560 TTCCATACAGCATGTCAGAACATAT--------TCGCGGCCTCGTTTCCC    601
                     |.||.||||||||||||...||.||        |.||||||      |.|
RBAM_026550__    560 TCCCTTACAGCATGTCACCTCAAATAAGAGAGCTTGCGGCC------CGC    603

BSNT_04313___    602 TGTGCCTGAATGCCATTGAAGAAAACGGAATGGAGCTCGACTTCAATACT    651
                     |||  ||..|.|||.|..|||||.|||||||||||||.||..|.|||||.
RBAM_026550__    604 TGT--CTTGACGCCGTGAAAGAACACGGAATGGAGCTGGATGTGAATACA    651

BSNT_04313___    652 TCCGGCTTAAGAAA-AACTTACGCTGGCG--GTATTTATATCGAGGATTG    698
                     |||||..|.||||| ||.|| .||.||.|  |||  ||.||.||||||||
RBAM_026550__    652 TCCGGGCTCAGAAAGAAGTT-TGCCGGGGAAGTA--TACATGGAGGATTG    698

BSNT_04313___    699 GAT-GCTGAATGA-AGCGAAGCAAAAGAAGATCCCGCTTGTGTTTGGGTC    746
                     ||| |||||  || .|||||||||||.||.||||||||..|.||.|||||
RBAM_026550__    699 GATGGCTGA--GACGGCGAAGCAAAAAAAAATCCCGCTCATATTCGGGTC    746

BSNT_04313___    747 AGATGCCCATCAAGCGGGAGATGTCGGATATGCGTATGAGGCGTTTTTGG    796
                     .||.|||||||||||||.|||||||||...|.|.||.||           
RBAM_026550__    747 GGACGCCCATCAAGCGGAAGATGTCGGCAGTTCCTACGA-----------    785

BSNT_04313___    797 AACGGTGCTAG---------------------    807
                     ||||    ||.                     
RBAM_026550__    786 AACG----TACAAAAACATCATTACTTCATAA    813


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04313 and RBAM_026550

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
