Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04319 and RBAM_026590
See
Amino acid alignment /
Visit
BSNT_04319 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:47
# Commandline: needle
# -asequence dna-align/BSNT_04319___rpsD.1.9828.seq
# -bsequence dna-align/RBAM_026590___rpsD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04319___rpsD-RBAM_026590___rpsD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04319___rpsD-RBAM_026590___rpsD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04319___rpsD
# 2: RBAM_026590___rpsD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 603
# Identity: 566/603 (93.9%)
# Similarity: 566/603 (93.9%)
# Gaps: 0/603 ( 0.0%)
# Score: 2682.0
#
#
#=======================================
BSNT_04319___ 1 ATGGCTCGCTATACAGGTCCATCTTGGAAACTGTCCCGCCGTCTAGGAAT 50
|||||||||||||||||||||||||||||||||||.||||||.|||||||
RBAM_026590__ 1 ATGGCTCGCTATACAGGTCCATCTTGGAAACTGTCTCGCCGTTTAGGAAT 50
BSNT_04319___ 51 CTCTCTTAGCGGTACAGGAAAAGAATTAGAAAAACGCCCTTACGCTCCAG 100
||||||||||||||||||.||||||||||||||||||||||||||.||||
RBAM_026590__ 51 CTCTCTTAGCGGTACAGGTAAAGAATTAGAAAAACGCCCTTACGCACCAG 100
BSNT_04319___ 101 GTCCACACGGCCCAGGACAACGTAAAAAATTATCAGAATACGGTTTGCAA 150
||||.|||||.||.|||||.|||||||||.||||||||||||||||||||
RBAM_026590__ 101 GTCCCCACGGTCCGGGACAGCGTAAAAAACTATCAGAATACGGTTTGCAA 150
BSNT_04319___ 151 TTGCAAGAAAAGCAAAAGCTTCGTCACATGTACGGTGTAAACGAACGTCA 200
|||||||||||||||||.||||||||||||||||||||||||||||||||
RBAM_026590__ 151 TTGCAAGAAAAGCAAAAACTTCGTCACATGTACGGTGTAAACGAACGTCA 200
BSNT_04319___ 201 ATTCCGCACTTTGTTTGACAAAGCTGGCAAACTAGCTGGTAAACACGGTG 250
|||||||||.||||||||||||||||..|||.|..|||||||||||||||
RBAM_026590__ 201 ATTCCGCACATTGTTTGACAAAGCTGCAAAAATGACTGGTAAACACGGTG 250
BSNT_04319___ 251 AAAACTTCATGATTCTTTTAGATTCTCGTCTTGATAACGTTGTGTACAAG 300
|||||||||||||||||||||||.|.||||||||||||||||||||||||
RBAM_026590__ 251 AAAACTTCATGATTCTTTTAGATGCACGTCTTGATAACGTTGTGTACAAG 300
BSNT_04319___ 301 CTAGGTTTAGCACGTACTCGCCGTCAAGCTCGCCAATTGGTTAACCACGG 350
||.|||.|.|||||.||||||||||||||.||||||||.|||||||||||
RBAM_026590__ 301 CTCGGTCTTGCACGCACTCGCCGTCAAGCACGCCAATTAGTTAACCACGG 350
BSNT_04319___ 351 TCACATTCTTGTAGACGGAAGCCGCGTTGACATCCCGTCTTACCTAGTGA 400
||||||.|||||.||||||||||||||||||||.||||||||||.|||.|
RBAM_026590__ 351 TCACATCCTTGTTGACGGAAGCCGCGTTGACATTCCGTCTTACCAAGTAA 400
BSNT_04319___ 401 AACCTGGTCAAACAATCGGTGTTCGCGAAAAATCAAGAAACCTTTCTATC 450
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_026590__ 401 AACCTGGTCAAACAATCGGTGTTCGCGAAAAATCAAGAAACCTTTCTATC 450
BSNT_04319___ 451 ATCAAAGAATCTGTTGAAGTGAACAACTTCGTTCCTGAATACCTTACTTT 500
||||||||||||||.|||||.|||||||||||||||||.|||||||||||
RBAM_026590__ 451 ATCAAAGAATCTGTAGAAGTAAACAACTTCGTTCCTGAGTACCTTACTTT 500
BSNT_04319___ 501 CGACGCTGAAAAGCTTGAAGGTACTTTCACTCGTCTTCCTGAGCGTTCTG 550
||||||||||||||||||||||||.||||||||||||||.|||||.||||
RBAM_026590__ 501 CGACGCTGAAAAGCTTGAAGGTACATTCACTCGTCTTCCAGAGCGCTCTG 550
BSNT_04319___ 551 AACTTGCTCCGGAAATTAACGAAGCGCTTATCGTTGAGTTCTACTCTCGT 600
|.||||||||||||||||||||||||||||||||||||||||||||.|||
RBAM_026590__ 551 AGCTTGCTCCGGAAATTAACGAAGCGCTTATCGTTGAGTTCTACTCCCGT 600
BSNT_04319___ 601 TAA 603
|||
RBAM_026590__ 601 TAA 603
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.