Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03099 and RBAM_026610
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:58
# Commandline: needle
# -asequence dna-align/BSNT_03099___yokH.1.9828.seq
# -bsequence dna-align/RBAM_026610___yokH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03099___yokH-RBAM_026610___yokH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03099___yokH-RBAM_026610___yokH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03099___yokH
# 2: RBAM_026610___yokH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 679
# Identity: 372/679 (54.8%)
# Similarity: 372/679 (54.8%)
# Gaps: 194/679 (28.6%)
# Score: 912.5
#
#
#=======================================
BSNT_03099___ 1 TTGGAATTTGAAAGGTTATTGTTAAAAGGAAATAAAGG------GGTGAT 44
.|||.| |||.|||||.||| |||.| |||
RBAM_026610__ 1 ATGGCA--------GTTTTTGTTGAAA------AAACGCTCCAAGGT--- 33
BSNT_03099___ 45 GTATGTGACTAACTTTGTTCATAAGACTGTAAATG------------GCT 82
|||| ||||.| |||.|| |||
RBAM_026610__ 34 --------CTAA----------AAGAAT-TAATTGATGAAAAAGGCCGCT 64
BSNT_03099___ 83 TGAAAAGTCTTTTAG---ATGAAAAAGGAGCCATTCAATTGTTTTGTTCT 129
|||||| |||||| ||| ||||||| |.||||
RBAM_026610__ 65 TGAAAA---TTTTAGGGAATG---AAGGAGC--------TCTTTT----- 95
BSNT_03099___ 130 GAAGGAGATACCATGGAATGCCTTGTTACTTTTTCACCGGACAAA---GC 176
|||.|| .||||| |..||.|||| ||| ||
RBAM_026610__ 96 -----AGAAAC---AGAATG--TATTTTCTTT----------AAAGGTGC 125
BSNT_03099___ 177 AACCCTTAACGACATTCAAAGCTTT--GAAGCTAAACATCAGA-TTACAC 223
|||...|...||.|||.||||.||| |||| ||.||.|.| |..|||
RBAM_026610__ 126 AACAGATCTGGAGATTGAAAGTTTTGAGAAG---AAAATAAAAGTCTCAC 172
BSNT_03099___ 224 TTCCAGAGGATTATCAGAAGTTCATGACACTGCATAACGGTGCGAAAATT 273
||||.||.||||||.|.|..||..|.|.|.||||||||||.||.|.|||.
RBAM_026610__ 173 TTCCTGAAGATTATAAAACCTTTTTAAAATTGCATAACGGAGCCAGAATA 222
BSNT_03099___ 274 TTTGAGATTCTT-TCTGATGGGGAGAATATAGGTGGAGGACTTCAGCTAT 322
||||| .||.|| |.|.|.||.||||||.|.|||||.||..|.|| |||
RBAM_026610__ 223 TTTGA-TTTGTTGTTTTACGGTGAGAATGTGGGTGGGGGTTTGCA--TAT 269
BSNT_03099___ 323 TTAGCCTT------GAAGAGATTGAAGAGGAGTT--AAAATATGAGGATT 364
| ||| ||||||||||||.||.|..| ||||| || |
RBAM_026610__ 270 T----CTTAATGTAGAAGAGATTGAAAAGTATATGCAAAAT----GG--T 309
BSNT_03099___ 365 TGTTTGAAGATATCAATGGTATTCCAATTGGCTACTTATTGGAAGAATGC 414
|.|||.||| ..|||.| .||||||..|.|...|..|.||.||.|.|||.
RBAM_026610__ 310 TTTTTAAAG-CCTCAGT-TTATTCCCGTCGCACATCTGTTAGACGGATGT 357
BSNT_03099___ 415 CATTTAATGATCGATAAAGATAAAGTGAACCAAGGT-------GATCCCA 457
.||||..|.||.||.|| ||||||..| ||.||.|
RBAM_026610__ 358 TATTTGTTAATTGACAA----------AACCAAAATGTCCACAGACCCAA 397
BSNT_03099___ 458 ACTATCTCTATAT----------ATTTGAAAGTGGTTTAGAATATAATCC 497
|||| |.||| ||||| |.||.|||.|.||
RBAM_026610__ 398 ACTA----TTTATGGTTCCGCGGATTTG---------TTGAGTATGAACC 434
BSNT_03099___ 498 ATT--AAATTTAAACTTTGAAAAATTTTTAGACCGGTATATATTGGC-CA 544
|.| ||.|| ||.|||||.|.|||||||||..|||||||..||.| ||
RBAM_026610__ 435 AATGCAACTT--AATTTTGAGATATTTTTAGATAGGTATATCATGTCTCA 482
BSNT_03099___ 545 ATGGGGAACCTTTTTGGGATTGGCGCTA-CTATACCGCAGAAAATTATTA 593
| ||.|.|..|||||||||.||| ..|| ||||||.||.|||||||||||
RBAM_026610__ 483 A-GGAGCAAATTTTTGGGAGTGG-AATATCTATACTGCTGAAAATTATTA 530
BSNT_03099___ 594 TAGAAC--------------AAGAT--AG 606
|||.|| |.||| |
RBAM_026610__ 531 TAGGACTCACCAGGGTGATGAGGATTAA- 558
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