Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02196 and RBAM_026710
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:53
# Commandline: needle
# -asequence dna-align/BSNT_02196___hmp.1.9828.seq
# -bsequence dna-align/RBAM_026710___hmp.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02196___hmp-RBAM_026710___hmp.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02196___hmp-RBAM_026710___hmp.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02196___hmp
# 2: RBAM_026710___hmp
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1232
# Identity: 877/1232 (71.2%)
# Similarity: 877/1232 (71.2%)
# Gaps: 73/1232 ( 5.9%)
# Score: 3021.0
#
#
#=======================================
BSNT_02196___ 1 ATGTTAGATAACAAAACAATCGAAATTATTAAAAGCACTGTACCCGTATT 50
|||.|.|||.|.|||||.||.|||||.|||||||||||.||.||.||.||
RBAM_026710__ 1 ATGCTCGATGAAAAAACGATTGAAATCATTAAAAGCACAGTGCCGGTCTT 50
BSNT_02196___ 51 GCAACAGCATGGAGAAACAATCACTGGCCGTTTTTACGATCGGATGTTTC 100
..||.|||||||.|||..||||||.||.||.|||||.||.|.|.||||||
RBAM_026710__ 51 AGAAGAGCATGGTGAAGAAATCACAGGACGATTTTATGACCTGCTGTTTC 100
BSNT_02196___ 101 AAGACCATCCAGAGCTTTTGAACATTTTTAATCAAACAAACCAAAAGAAA 150
|..|.||.||.|||||..||||.||.||||||||.|||||.|||||||||
RBAM_026710__ 101 AGCATCACCCTGAGCTGCTGAATATCTTTAATCAGACAAATCAAAAGAAA 150
BSNT_02196___ 151 AAAACACAGCGAATTGCTCTGGCAAATGCCGTTATTGCAGCTGCGGCAAA 200
|||||||||||.|..||..||.|.|||||.||.||||||||.||.||.||
RBAM_026710__ 151 AAAACACAGCGTACGGCCTTGTCGAATGCTGTGATTGCAGCCGCAGCCAA 200
BSNT_02196___ 201 CATTGACCAATTAGGAAACATCATTCCGGTTGTCAAACAAATCGGCCACA 250
.|||||||...|.|.|||||||.||||.||.||||||||||||.||||.|
RBAM_026710__ 201 TATTGACCGGCTGGAAAACATCGTTCCCGTCGTCAAACAAATCAGCCATA 250
BSNT_02196___ 251 AGCACCGCAGTATCGGAATTAAGCCTGAGCACTACCCAATCGTCGGTAAA 300
|.|||||.||||||||..|||||||.|||||.|||||||||||.||.||.
RBAM_026710__ 251 AACACCGGAGTATCGGTGTTAAGCCCGAGCATTACCCAATCGTTGGAAAG 300
BSNT_02196___ 301 TATTTGCTGATTGCGATTAAAGATGTATTGGGAGACGCTGCAACTCCTGA 350
||.|||.|.||.|||||.||.|||||..|...|||||..||..|||||||
RBAM_026710__ 301 TACTTGTTAATCGCGATAAAGGATGTGCTAAAAGACGGGGCCGCTCCTGA 350
BSNT_02196___ 351 CATTATGCAGGCATGGGAAAAAGCGTACGGAGTCATTGCTGACGCGTTCA 400
..|.||.|||||||||||||||||.|||||.||||||||.|||||.||.|
RBAM_026710__ 351 GGTCATTCAGGCATGGGAAAAAGCATACGGCGTCATTGCAGACGCTTTTA 400
BSNT_02196___ 401 TCGGAATTGAAAAAGACATGTATGAACAGGCTGAAGAGCAAGCCGGCGGC 450
||||||||||.||.||||||||||||||.||.|||..||||...||||||
RBAM_026710__ 401 TCGGAATTGAGAAGGACATGTATGAACAAGCGGAAACGCAAAAAGGCGGC 450
BSNT_02196___ 451 TGGAAGGAGTATAAGCCATTCGCTATCGCAAAAAAAGAGCGG-----GAA 495
|||||.||.||||||.|.||....||.|..||||| || |||
RBAM_026710__ 451 TGGAAAGACTATAAGGCGTTTCAAATTGATAAAAA-----GGTAAAAGAA 495
BSNT_02196___ 496 AGCAAAGAAATTACATCCTTCTATTTGAAACCAGAAGACGG-CAAGCCGT 544
||||||||.||.||.||.||.|||||.|||||.|||||||| ||| ||
RBAM_026710__ 496 AGCAAAGAGATAACGTCGTTTTATTTAAAACCGGAAGACGGACAA---GT 542
BSNT_02196___ 545 --TACCTGAATTCCAAGCAGGTCAATATATCAGCATCAAAGTGCGGATTC 592
|.||.||||||.||||.||.||.||||||||..|.|||||....||||
RBAM_026710__ 543 TCTCCCCGAATTCAAAGCGGGGCAGTATATCAGTGTAAAAGTATACATTC 592
BSNT_02196___ 593 CTGATTTTGAATATACGCATATCCGCCAGTACAGCCTGTCTGATATGCCG 642
|.||....|..|||||||||||||||||.||||||.|.||.||..||.|.
RBAM_026710__ 593 CGGACACGGGCTATACGCATATCCGCCAATACAGCTTATCCGACGTGTCC 642
BSNT_02196___ 643 GGAAAAGACTATTATCGAATTTCAGTGAAGAAAGATGGTGTCGTGTCTTC 692
||.||.||.|||||.||.|||||.|||||.|||||.||..|.||.||.||
RBAM_026710__ 643 GGTAAGGATTATTACCGGATTTCCGTGAAAAAAGAAGGGATTGTTTCCTC 692
BSNT_02196___ 693 ------------CTACTTACACGATGGGCTGCAGGAGGGAGATTCAATAG 730
|.|.||||||||...| ||||||||.|
RBAM_026710__ 693 ATATCTGCATGACCAATTACACGAAAAG------------GATTCAATTG 730
BSNT_02196___ 731 AGATCAGCGCGCCGGCAGGGGACTTTGTTTTAGATCATGCATCACAAAAA 780
||||||||||.|||||.|||||.||.||.|||||.|.|| ||..||||||
RBAM_026710__ 731 AGATCAGCGCTCCGGCCGGGGATTTCGTATTAGACCCTG-ATTCCAAAAA 779
BSNT_02196___ 781 G-ATCTCGTTTTGATCAGTGCCGGAGTTGGCATTACACCAATGATCAGCA 829
| ||||.|||.|.|||||||||||.||.||.|||||.||.||||||||||
RBAM_026710__ 780 GAATCTGGTTCTCATCAGTGCCGGTGTCGGAATTACCCCGATGATCAGCA 829
BSNT_02196___ 830 TGTTGAAAACATCTGTTTCCAAA---CAGCCTGAACGGCAAA--TTCTGT 874
||||.||.| |.|||.||||| |||||..|.|| ||| ||||.|
RBAM_026710__ 830 TGTTAAAGA---CGGTTGCCAAAACCCAGCCGCAGCG--AAACGTTCTCT 874
BSNT_02196___ 875 TCATTCATGCGGCGAAAAACAGTGAATATCATGCATTGCGCCATGAGGTA 924
|.||.||||||||.|..|.|.|.||.||||||||.|||||.|||||.|..
RBAM_026710__ 875 TTATCCATGCGGCAAGGAGCGGAGAGTATCATGCGTTGCGGCATGAAGCT 924
BSNT_02196___ 925 GAAGAAGCAGCAAAACATTCTGCTGTTAAAACAGCATTTGTGTATCGCGA 974
||||||||.||..||||.||..|.|||.|.||....|||.|.||..|.||
RBAM_026710__ 925 GAAGAAGCCGCGGAACACTCATCCGTTGACACCCTCTTTATTTACAGTGA 974
BSNT_02196___ 975 GCCGACAGAGGAAGACCGTGCAGGTGATCTGCATTTTCATGAAGGACAGA 1024
||||.|.||..||||||||.|||...|..|.|.|||||..|||||.|.||
RBAM_026710__ 975 GCCGTCCGAACAAGACCGTTCAGAAAACATTCGTTTTCGGGAAGGCCGGA 1024
BSNT_02196___ 1025 TTG---ATCAGCAATTCCTCA-AAGAACTGATTGCCA-ACACAGATGCGG 1069
||| |.||||..|| | |||||.||| ||.|| |.|.||||||.|
RBAM_026710__ 1025 TTGACAAACAGCTGTT----AGAAGAAGTGA-TGACAGATAAAGATGCTG 1069
BSNT_02196___ 1070 ATTACTATATTTGTGGTTCACCGTCGTTTATTACAGCAATGCATAAGCTT 1119
|||..||..|.||.||.|||||||||||.||||.||.||||.|.|||||.
RBAM_026710__ 1070 ATTTTTACCTGTGCGGATCACCGTCGTTCATTAAAGAAATGAAAAAGCTG 1119
BSNT_02196___ 1120 GTATCAGAGCTCGGAT-CGGCGCCGGAGTCTATCCATTACGAGCTATTCG 1168
.|.||.||..|| .|| |..|||||||.||.||.||.||.||..||||.|
RBAM_026710__ 1120 ATTTCTGAATTC-AATACACCGCCGGAATCCATTCACTATGAATTATTTG 1168
BSNT_02196___ 1169 GCCCGCAATTAAGTTTGGCGCAGTCCGTTTGA 1200
..|||||..|.|||.|| ||.|||
RBAM_026710__ 1169 AACCGCAGCTGAGTATG---------GTGTGA 1191
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