Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04326 and RBAM_026820
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:47
# Commandline: needle
# -asequence dna-align/BSNT_04326___acuB.1.9828.seq
# -bsequence dna-align/RBAM_026820___acuB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04326___acuB-RBAM_026820___acuB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04326___acuB-RBAM_026820___acuB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04326___acuB
# 2: RBAM_026820___acuB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 677
# Identity: 465/677 (68.7%)
# Similarity: 465/677 (68.7%)
# Gaps: 64/677 ( 9.5%)
# Score: 1520.5
#
#
#=======================================
BSNT_04326___ 1 ATGATTGTTGAGCAAATCATGAAAAGAGATGTCATTACATTAACG----- 45
|||||||..||.||||||||||||.|.||.|||||.|| ||
RBAM_026820__ 1 ATGATTGCAGAACAAATCATGAAACGGGACGTCATCAC-----CGTCTCA 45
BSNT_04326___ 46 -AAGACGGATACGC--TTGAAACAGCAATATGCAAACTGAAGGAATTCCA 92
||.||| ||.| ||||||||||..|..|.|||.|||||..||..||
RBAM_026820__ 46 AAACACG---ACTCCATTGAAACAGCCGTCCGTAAAATGAAGATATATCA 92
BSNT_04326___ 93 TATCAGGCATCTGCCTGTTGTAGATGAAGAACGACACGTGATCGGCATGA 142
||||.|.|||||.|||||..|.||.||.||.|..|||||.|||||.||..
RBAM_026820__ 93 TATCCGCCATCTCCCTGTCATCGACGACGAGCTGCACGTCATCGGTATTG 142
BSNT_04326___ 143 TTACAGACAGAGACATGAAACAGGCCAGCCCGAGTATTTTTGAAGAAAAC 192
|.||||||||||||||.|||||||||.||||..|.|..||.|||.||||.
RBAM_026820__ 143 TCACAGACAGAGACATTAAACAGGCCGGCCCCGGCAGCTTCGAACAAAAG 192
BSNT_04326___ 193 AAACGAAGCCTATTTCT--CACACGAAGCGTAGATTCAATTATGAAAAAG 240
.||||..||...||||| ||.||.|||.|.||| |.||||||||
RBAM_026820__ 193 GAACGCGGCGCGTTTCTGACAAACAAAGTGGAGA--CCATTATGAA---- 236
BSNT_04326___ 241 G----ATGTTGTCTGCGTCCACCCGTTAGATTTTGTCGAAGAAATATCAG 286
| ||||..||||||.|||.|||.|.||.|||||.|||||||||||.|
RBAM_026820__ 237 GCGCAATGTCATCTGCGCCCATCCGCTTGACTTTGTGGAAGAAATATCCG 286
BSNT_04326___ 287 CCGTGTTC----TACGAGCATGGCATCGGCTGCCTTCCAGT---GGTACA 329
| ||| ||.|||||.|||||||||||.||.||..| ||||.|
RBAM_026820__ 287 C----TTCCTTTTATGAGCACGGCATCGGCTGTCTGCCGATTACGGTAAA 332
BSNT_04326___ 330 CCATCAAAAATTAATAGGCATTTTAACAAAAACCGATTTGCTGCGGACGT 379
|||| ||..|.|..|||||||||||.||||||||..||||.|||||.|
RBAM_026820__ 333 CCAT---AAGCTGACGGGCATTTTAACGAAAACCGACGTGCTCCGGACTT 379
BSNT_04326___ 380 TTGTCAAATTGACAGGCGCTGACCAGCCGGGATCGCAAATTGAGATAAAA 429
|.||||...||||||||||.|.||||||||||||.||..|.||.||....
RBAM_026820__ 380 TCGTCAGCCTGACAGGCGCGGCCCAGCCGGGATCACAGGTGGAAATCCTG 429
BSNT_04326___ 430 GTAAACGACATCACCAAAAGCCTCGCTGAGATCAGCAGTCTTTGCCAAGA 479
||.|..||.||.||.||||||||.|||||..|||||.|..|.||||..||
RBAM_026820__ 430 GTGACGGATATGACAAAAAGCCTTGCTGATCTCAGCTGCATGTGCCGTGA 479
BSNT_04326___ 480 CCTTCAAGTGAAAATATTAAGCGTGCTTGTTTATCCGCATGA---CGATC 526
.|||||..||.||||..|.||.|||||.||.|||||.||||| || |
RBAM_026820__ 480 TCTTCAGCTGCAAATCCTGAGTGTGCTCGTCTATCCCCATGATTCCG--C 527
BSNT_04326___ 527 CCGGTGTAAAAGTGCTTGTCTTCCGTGTAAAAACGATGAATCCGCTGCCG 576
|.|||..||.| |.||.||||||||.||.||.||||||||||||||.||.
RBAM_026820__ 528 CGGGTCGAACA-TTCTCGTCTTCCGGGTGAAGACGATGAATCCGCTCCCT 576
BSNT_04326___ 577 TTTTTGCAGGCATTACAAAGAA-ATGGACACCACGTCTTATGGCCGTCAG 625
|||.|.|..||..|.| ||||| ..|||.||.|.||||||||||||
RBAM_026820__ 577 TTTATCCGTGCCGTTC-AAGAAGCCGGATACAATGTCTTATGGCCG---- 621
BSNT_04326___ 626 AGCAA-------AGGGATCTGCTATGA 645
|| |||||||.||.||||
RBAM_026820__ 622 ---AAACATTTGAGGGATCAGCCATGA 645
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