Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04350 and RBAM_026970

See Amino acid alignment / Visit BSNT_04350 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:49
# Commandline: needle
#    -asequence dna-align/BSNT_04350___ytoP.1.9828.seq
#    -bsequence dna-align/RBAM_026970___ytoP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04350___ytoP-RBAM_026970___ytoP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04350___ytoP-RBAM_026970___ytoP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04350___ytoP
# 2: RBAM_026970___ytoP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1079
# Identity:     839/1079 (77.8%)
# Similarity:   839/1079 (77.8%)
# Gaps:          10/1079 ( 0.9%)
# Score: 3232.0
# 
#
#=======================================

BSNT_04350___      1 ATGAATCAAGAAACGAAAGCGCTTTTCCAAACACTGACGCAGCTTCCCGG     50
                     ||||||.|.|||||||||.|||||||||..||.|||||||||||||||||
RBAM_026970__      1 ATGAATGAGGAAACGAAAACGCTTTTCCGGACGCTGACGCAGCTTCCCGG     50

BSNT_04350___     51 CGCGCCGGGCAATGAGCATCAGGTTCGTGCTTTTATGAAGCAGGAGCTAG    100
                     |||.|||||.|||||.||||||||.||..|.||||||||.|.||||||.|
RBAM_026970__     51 CGCACCGGGAAATGAACATCAGGTCCGCTCCTTTATGAAACGGGAGCTTG    100

BSNT_04350___    101 CCAAATATGCCGATGACATCGTTCAGGACAGACTGGGAAGTGTTTTCGGA    150
                     |.||||||||.|||||||||||.|||||||||||.|||||||||||||||
RBAM_026970__    101 CGAAATATGCGGATGACATCGTGCAGGACAGACTCGGAAGTGTTTTCGGA    150

BSNT_04350___    151 GTCAGACGAGGCGCAGAGGACGCACCGAGAATTATGGTAGCCGGGCACAT    200
                     ||.||.||.|||||.||.||.||.||||...|||||||||||||.||.||
RBAM_026970__    151 GTAAGGCGCGGCGCTGAAGATGCGCCGACCGTTATGGTAGCCGGCCATAT    200

BSNT_04350___    201 GGACGAAGTCGGCTTCATGGTGACATCCATTACAGACAACGGGCTGCTCA    250
                     |||||||||.||.||.|||||.||....|||||.||.|||||..||||.|
RBAM_026970__    201 GGACGAAGTGGGGTTTATGGTAACGCAGATTACGGATAACGGCATGCTGA    250

BSNT_04350___    251 GATTCCAGACGCTCGGAGGCTGGTGGAGCCAGGTTTTGCTTGCGCAGCGG    300
                     ||||.|||||||||||.|||||||||||.|||||..|||||||.|||||.
RBAM_026970__    251 GATTTCAGACGCTCGGCGGCTGGTGGAGTCAGGTGCTGCTTGCCCAGCGC    300

BSNT_04350___    301 GTTGAAATTCAAACAGATAACGGGCCGGTTCCGGGTGTGATTTCAAGCAT    350
                     ||.||..|.||.||.||||||||.|||.||...||.||.||.||||||||
RBAM_026970__    301 GTCGAGGTGCAGACGGATAACGGACCGATTATCGGCGTCATCTCAAGCAT    350

BSNT_04350___    351 ACCGCCGCATTTATTGACAGATGCGCAGCG---AAACCGTCCGATGGATA    397
                     .|||||.||..|.||.||||||||.|||||   |||   .||||||||.|
RBAM_026970__    351 CCCGCCCCACATTTTAACAGATGCCCAGCGCGCAAA---GCCGATGGAGA    397

BSNT_04350___    398 TCAAGAACATGATGATCGACATTGGAGCGGATGATAAGGAAGACGCCATC    447
                     ||||.||.||||||||.||.||.||.||.|||||.|..||.|||||..||
RBAM_026970__    398 TCAAAAATATGATGATTGATATCGGTGCCGATGACAGAGAGGACGCGGTC    447

BSNT_04350___    448 AAAATCGGCATTAAACCGGGACAGCAGATCGTGCCTGTTTGTCCGTTTAC    497
                     |||||.||.||.|.|||||||||||||.||||||||||.||.|||||.||
RBAM_026970__    448 AAAATGGGGATCAGACCGGGACAGCAGGTCGTGCCTGTCTGCCCGTTCAC    497

BSNT_04350___    498 GACGATGGCGAATGAAAAGAAAATTTTATCAAAAGCATGGGATAACAGAT    547
                     ..|||||||.||.||.||||||||.||.||.|||||.|||||||||.|.|
RBAM_026970__    498 CCCGATGGCCAACGAGAAGAAAATATTGTCCAAAGCGTGGGATAACCGCT    547

BSNT_04350___    548 ATGGATGCGGCTTAAGCATTGAACTTCTGAAGGAATTACACGGTAAAGAG    597
                     |.||.|||||.||||||||||||||..|.||.||..|.|||||.|||||.
RBAM_026970__    548 ACGGCTGCGGGTTAAGCATTGAACTATTAAAAGAGCTGCACGGAAAAGAC    597

BSNT_04350___    598 CTTCCGAATACACTCTATGCGGGTGCAACGGTTCAGGAAGAAGTAGGGCT    647
                     ||.|||||.|..||.||.||.||.||.||.||||||||.|||||.||..|
RBAM_026970__    598 CTGCCGAACAATCTGTACGCCGGGGCCACCGTTCAGGAGGAAGTCGGTTT    647

BSNT_04350___    648 AAGGGGCGCGCAGACGGCTTCTCATATGATTAAACCGGACTTGTTTTTCG    697
                     .||.||.||||||||.||..|..|.||||||.|.||.||..|.|||||||
RBAM_026970__    648 GAGAGGGGCGCAGACAGCGGCCAACATGATTCAGCCTGATCTCTTTTTCG    697

BSNT_04350___    698 CCCTTGACGCCAGCCCGGCAAACGATATGAGCGGAGACAA--AAATGAAT    745
                     |.|||||.||||||||||||||.|||||||||||.||.||  |..||  |
RBAM_026970__    698 CGCTTGATGCCAGCCCGGCAAATGATATGAGCGGCGATAAGGAGCTG--T    745

BSNT_04350___    746 TCGGCCAGCTTGGAAAAGGCTTTTTGCTGCGCATTCTTGACAGAACGACA    795
                     ||||||..||.||..|.||..|..||||.||||||||.|||||||||||.
RBAM_026970__    746 TCGGCCGTCTCGGCGAGGGGGTGCTGCTCCGCATTCTCGACAGAACGACG    795

BSNT_04350___    796 GTCATGCATCGCGGAATGAGGGAATTCGTTCTTGATATGGCTGAAACGCA    845
                     ||||||||.|||||.|||||.||.|||||.|||||||||||.||||||||
RBAM_026970__    796 GTCATGCACCGCGGGATGAGAGAGTTCGTCCTTGATATGGCGGAAACGCA    845

BSNT_04350___    846 TGATATTCCATATCAATATTTTGTATCCGGCGGGGGAACAGACGCAGGCA    895
                     ..||||.||.|||||||||||.|..||.|||||||||||.||.||.||..
RBAM_026970__    846 CAATATCCCTTATCAATATTTCGCTTCAGGCGGGGGAACGGATGCCGGAC    895

BSNT_04350___    896 AGGTTCATATTTCGAACAGCGGTGTGCCGTCAGCGGTTATCGGAATATGT    945
                     .|||.||.||.||.||||||||.||.|||||.||.||.|||||.||.|||
RBAM_026970__    896 GGGTCCACATATCAAACAGCGGGGTTCCGTCTGCCGTCATCGGCATTTGT    945

BSNT_04350___    946 TCCCGCTATATTCATACAAACGCTTCTATCATTCATATTGATGATTATGC    995
                     ||..|.||.|||||||||||.||..|.|||||||||.|.|||||||||||
RBAM_026970__    946 TCAAGATACATTCATACAAATGCCGCCATCATTCATGTCGATGATTATGC    995

BSNT_04350___    996 TGCTGCTAAAGAAATGCTCATCAAACTTGTAACAGCCTGCGATAAGCAGA   1045
                     .||.||.||||||||||||||.||.||.||.|..||..|.||.||.||||
RBAM_026970__    996 CGCGGCGAAAGAAATGCTCATTAAGCTGGTCATGGCGAGTGACAAACAGA   1045

BSNT_04350___   1046 CGGTGGATGCGATTAAAGAAAATATGTAG   1074
                     ||||.||..||||.|.|||||||.||||.
RBAM_026970__   1046 CGGTCGAAACGATCAGAGAAAATGTGTAA   1074


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