Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04353 and RBAM_026990

See Amino acid alignment / Visit BSNT_04353 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:49
# Commandline: needle
#    -asequence dna-align/BSNT_04353___malS.1.9828.seq
#    -bsequence dna-align/RBAM_026990___malS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04353___malS-RBAM_026990___malS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04353___malS-RBAM_026990___malS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04353___malS
# 2: RBAM_026990___malS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1715
# Identity:    1307/1715 (76.2%)
# Similarity:  1307/1715 (76.2%)
# Gaps:          31/1715 ( 1.8%)
# Score: 4869.0
# 
#
#=======================================

BSNT_04353___      1 GTGAAACAATTCAAAGTAACAAACGAAGGAGACATTCAAACAACATTAAG     50
                     |||||.|||||..||||.||.||.||.|||||.||..||||||||.|..|
RBAM_026990__      1 GTGAATCAATTTCAAGTGACGAAAGATGGAGAAATCAAAACAACACTGCG     50

BSNT_04353___     51 AGGCCTTGAAGTGCTCTCTGTTCCTTTTTTGAACAAAGGTGTTGCTTTTA    100
                     .||..|.||||||||.|||...||||||||.||.|||||.||.||.||||
RBAM_026990__     51 CGGATTAGAAGTGCTTTCTACGCCTTTTTTAAATAAAGGGGTGGCCTTTA    100

BSNT_04353___    101 CTGAGGAAGAAAGAAAAGAACTTGGTTTAAAAGGCTTTCTGCCGCCCAAG    150
                     |..||||.||||||||.|||||.||..|..|.||.|||||||||||.||.
RBAM_026990__    101 CACAGGAGGAAAGAAAGGAACTCGGGCTCGAGGGGTTTCTGCCGCCGAAA    150

BSNT_04353___    151 GTATTAACAATTGACGATCAGGCGAAAAGAGCGTATGAACAATATTCCG-    199
                     |||||.|||||.||.||.|||||||...|.||.||.|||||  ||||.| 
RBAM_026990__    151 GTATTGACAATCGAAGAGCAGGCGAGGCGGGCCTACGAACA--ATTCAGT    198

BSNT_04353___    200 -CACAGCCTGACGATTTGAGCAAAAATGTCTATTTAACTGCGCTGCACGA    248
                      |.||||||||.||..||||||||||.||.||.||.||.||.||.||.||
RBAM_026990__    199 TCGCAGCCTGATGAGCTGAGCAAAAACGTGTACTTGACCGCTCTCCATGA    248

BSNT_04353___    249 TCGGAATGAAACGCTGTTTTACCGCCTGTTAAATGACCATTTAGGGGAAA    298
                     .||||||||||||.|.||||||.|.|||||||||||.||||||||.||||
RBAM_026990__    249 CCGGAATGAAACGTTATTTTACAGGCTGTTAAATGATCATTTAGGCGAAA    298

BSNT_04353___    299 TGCTCCCGATTGTCTACACACCGACAGTCGGAACGGCAATCCAGAGATAC    348
                     ||||.|||||.||.||.||.|||||.|||||.||.||.||||||.|.|||
RBAM_026990__    299 TGCTGCCGATCGTATATACGCCGACCGTCGGCACCGCGATCCAGCGTTAC    348

BSNT_04353___    349 AGCCATGAATACAGAAAACCACGAGGGCTCTATCTGTCAATCGATGACCC    398
                     ||||||||.|||||||||||.||.||.||.|||.|||||||.|||||.||
RBAM_026990__    349 AGCCATGAGTACAGAAAACCCCGCGGTCTGTATTTGTCAATAGATGATCC    398

BSNT_04353___    399 GGACGGTATGAAAGAAGCATTTAAACAGTAT----AAAGATCAAAGCGAT    444
                     .||.||.|||...|..||||||.|.|||| |    |||.||.|||.|   
RBAM_026990__    399 TGAGGGAATGCGCGCCGCATTTCAGCAGT-TCGGAAAAAATGAAAAC---    444

BSNT_04353___    445 ACGATCGATTTAATTGTTGCAACTGATGCGGAAGGAATTTTAGGGATCGG    494
                        ||.||.|||||.|||||.||.||||||||.||.|||.|.||.|||||
RBAM_026990__    445 ---ATTGACTTAATCGTTGCCACAGATGCGGAGGGCATTCTGGGAATCGG    491

BSNT_04353___    495 TGACTGGGGCGTCGGAGGAATCGCGATTTCTATTGGAAAGCTGGCGGTTT    544
                     |||||||||||||||.||.|||||.||||||.|.|||||.||.|||||.|
RBAM_026990__    492 TGACTGGGGCGTCGGCGGCATCGCCATTTCTGTCGGAAAACTCGCGGTGT    541

BSNT_04353___    545 ATACAGCGGCTGCGGGCATTGATCCGAGCA-GAGTGCTGGCTGTTGTTTT    593
                     ||||.|||||.||.||.|||||||| |.|| |||||||.||.||.||.||
RBAM_026990__    542 ATACGGCGGCGGCCGGAATTGATCC-ATCACGAGTGCTTGCGGTCGTATT    590

BSNT_04353___    594 AGATGCGGGGACAAATCAGGAGAGCCTCTTGAACGATCCGCTTTATGTCG    643
                     .||.|||||||||||||||||.||||||||.||.||.|||||.|||||||
RBAM_026990__    591 GGACGCGGGGACAAATCAGGAAAGCCTCTTAAATGACCCGCTGTATGTCG    640

BSNT_04353___    644 GCAACCAGCATTCTAGAGTGCGCG--GAGAACGCTATGACCAATTTATTG    691
                     |.|||||||||||.||||||||||  |||||  .|||||||..|||||||
RBAM_026990__    641 GAAACCAGCATTCAAGAGTGCGCGGCGAGAA--ATATGACCGCTTTATTG    688

BSNT_04353___    692 ACGACTACGTTGCGCTGGCGAGAGAAACATTTCCGAATGCATTGCTGCAT    741
                     |.||.||.||..||||.||..|.||||||||.||||||||..||||.|||
RBAM_026990__    689 ATGAGTATGTCTCGCTTGCCCGGGAAACATTCCCGAATGCGCTGCTTCAT    738

BSNT_04353___    742 TGGGAGGATTTCGGGGCGAAAAACGCTCGAAGCATTTTGAAACGCTATAA    791
                     ||||||||||||||..||...|||||.||..||||.||.|||||.|||||
RBAM_026990__    739 TGGGAGGATTTCGGTACGGCTAACGCCCGCGGCATATTAAAACGGTATAA    788

BSNT_04353___    792 AGATAAAGTGTGTACCTTCAATGATGATATCCAAGGAACTGGCGCTGTTT    841
                     |||||||||.|||||.||.||.|||||.||.||||||||.|||||.||.|
RBAM_026990__    789 AGATAAAGTCTGTACGTTTAACGATGACATTCAAGGAACGGGCGCGGTAT    838

BSNT_04353___    842 CTTTGGCCGCAGTCTTATCCTGTGCAAAAGCGTCTAAAGTTCCATTGAGG    891
                     |..|.||.||.||.|||.|.|||||||||||.||.|||||.||.||.|..
RBAM_026990__    839 CGCTTGCAGCTGTTTTAGCGTGTGCAAAAGCATCAAAAGTGCCTTTAAAA    888

BSNT_04353___    892 GATCACAGAGTTGTTATATTCGGAGCGGGAACGGCAGGAATCGGAATTGC    941
                     ||.||.|.|||.||..|.|||||.|||||||||||.||.|||||||||||
RBAM_026990__    889 GAGCATAAAGTCGTCGTCTTCGGCGCGGGAACGGCCGGTATCGGAATTGC    938

BSNT_04353___    942 CGAACAGCTGCGGGAAGCATTGGTGCGCGAGGGACTGAGTGAAGAAGAAT    991
                     .||.||||||||.|||||..||||||..||.|||.|.||.||||||||||
RBAM_026990__    939 TGAGCAGCTGCGCGAAGCCATGGTGCATGACGGATTAAGCGAAGAAGAAT    988

BSNT_04353___    992 CATACAAGCGCTTCTGGTGCATAGACAGAAACGGGCTGTTAACAGATGAT   1041
                     |.||||..|..||.|||||.||.|||||||||||..|||||||.||||||
RBAM_026990__    989 CCTACAGCCATTTTTGGTGTATCGACAGAAACGGATTGTTAACGGATGAT   1038

BSNT_04353___   1042 ATGGATCAGCTT-CTTGATTTCCAAAAGCCGTATGCTCGTTCGGCTGATG   1090
                     |||.|..| ||| |.||||||.||....|||||.||.||..|.|||||||
RBAM_026990__   1039 ATGAAGGA-CTTGCGTGATTTTCAGGTTCCGTACGCGCGCCCTGCTGATG   1087

BSNT_04353___   1091 AAGTAAAGGATTATCAG-CGGAACGGAGACGGCGGAGGCATTGATCTTCT   1139
                     ||||.||.||.|| |.| ||.|.|||.||.||||||...||.|||||...
RBAM_026990__   1088 AAGTGAAAGAGTA-CGGCCGCAGCGGTGAAGGCGGATCAATCGATCTGGC   1136

BSNT_04353___   1140 TGAAGTGGTCCGGCAGGCAAAACCGACGATCCTGATCGGCACATCTACGG   1189
                     .||...|||.||.|||||.||.||||||||.||||||||||||||.||.|
RBAM_026990__   1137 GGAGACGGTGCGTCAGGCCAAGCCGACGATTCTGATCGGCACATCCACCG   1186

BSNT_04353___   1190 TTTCCGGCGCTTTCACTGAAGAAATTGTAAAAGAAATGGCGTCACATGTG   1239
                     |.||.|||||.||.||.||||||||.||.|||||||||||.||||||||.
RBAM_026990__   1187 TATCAGGCGCATTTACGGAAGAAATCGTCAAAGAAATGGCCTCACATGTC   1236

BSNT_04353___   1240 AAACGGCCCGCGATTTTGCCAATGTCAAATCCGACAACTCTTTCTGAAGC   1289
                     ||||||||.||.||||||||.||||||||.|||||.||..|.||.|||||
RBAM_026990__   1237 AAACGGCCGGCTATTTTGCCGATGTCAAACCCGACGACATTATCAGAAGC   1286

BSNT_04353___   1290 AAAGCCGGAGGATTTAATCGAATGGACAGAAGGCCGTGCGCTGATCACGA   1339
                     |||.||.||.|||||.||..|||||||.||||||||.|||||..||||.|
RBAM_026990__   1287 AAAACCTGAAGATTTGATTAAATGGACGGAAGGCCGCGCGCTTGTCACTA   1336

BSNT_04353___   1340 CAGGAAGCCCGTTCCCGCCAGTTGAATATAACGGAGTTACGTATCATATC   1389
                     |.||.||.|||||.|||||.||||..|||||.||.|||||.||.||||||
RBAM_026990__   1337 CGGGTAGTCCGTTTCCGCCTGTTGCGTATAAAGGCGTTACCTACCATATC   1386

BSNT_04353___   1390 GGGCAGGCAAACAACGCGCTTGTCTTCCCTGGTCTCGGTCTTGGAACGAT   1439
                     ||.|||||.|||||||||||.||.|||||.||.|||||.||.||||||||
RBAM_026990__   1387 GGACAGGCGAACAACGCGCTCGTATTCCCGGGACTCGGGCTCGGAACGAT   1436

BSNT_04353___   1440 TGTTACCAAATCAAAATTAATTACCGACGGCATGTTTGAAGCATGTGCCC   1489
                     |||.||.|||.||||..|.|||||.|||...|||||.|..||.||.||..
RBAM_026990__   1437 TGTGACAAAAGCAAAGCTCATTACGGACAATATGTTCGTTGCCTGCGCGA   1486

BSNT_04353___   1490 GGGCAATCGCAGGTATGGTCAATGTCGGGGTGCCTGGCGCGCCGATGCTT   1539
                     ..||.|||||.||||||||..|.|||||...|||.||.||||||||||||
RBAM_026990__   1487 ATGCCATCGCCGGTATGGTGGACGTCGGCAAGCCGGGTGCGCCGATGCTT   1536

BSNT_04353___   1540 CCGAAAGTTGAAGATTTGCGCACTGTTTCGGCAACCGTTGCGGTTGAAGT   1589
                     ||||||||.||.|||.|..|.||.||.||||||||.||.|||||.|..||
RBAM_026990__   1537 CCGAAAGTGGAGGATCTCAGGACGGTATCGGCAACTGTGGCGGTAGCTGT   1586

BSNT_04353___   1590 CGCAAAAACCGCGATGAAGGAAGGCGTTGCTACGGAA---GAGCCAGAAG   1636
                     .||||||.|.|||||..||||.||.||.|   |||||   ||.||.||.|
RBAM_026990__   1587 AGCAAAAGCTGCGATTCAGGACGGTGTAG---CGGAAACGGAACCCGAGG   1633

BSNT_04353___   1637 ACATTATACAGGCAGTGCAGGATGCGATGTGGTATCCGGTATACAAACCG   1686
                     |..|.||.||.||.||||||||.|||||||||.|.||.|||||.||||..
RBAM_026990__   1634 ATCTGATCCAAGCGGTGCAGGACGCGATGTGGCACCCCGTATATAAACGA   1683

BSNT_04353___   1687 ATTCGCGCGATATAA   1701
                     |||||..||||.|||
RBAM_026990__   1684 ATTCGGCCGATGTAA   1698


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