Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04370 and RBAM_027090

See Amino acid alignment / Visit BSNT_04370 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:50
# Commandline: needle
#    -asequence dna-align/BSNT_04370___ytiP.1.9828.seq
#    -bsequence dna-align/RBAM_027090___ytiP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04370___ytiP-RBAM_027090___ytiP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04370___ytiP-RBAM_027090___ytiP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04370___ytiP
# 2: RBAM_027090___ytiP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1316
# Identity:    1014/1316 (77.1%)
# Similarity:  1014/1316 (77.1%)
# Gaps:          28/1316 ( 2.1%)
# Score: 3827.5
# 
#
#=======================================

BSNT_04370___      1 ATGTTTCATCTAAAAGAGCAGCAAACATCCATAAAGCAAGAAATCATAGC     50
                     |||||||||||..|..||||.|||||..|.|||||...||||||.|..||
RBAM_027090__      1 ATGTTTCATCTCGACAAGCATCAAACGACAATAAAAAGAGAAATTACCGC     50

BSNT_04370___     51 AGGGCTGACGACCTTTTTCACAATGGTCTATATCGTCGTGGTCAATCCGG    100
                     .||..||||.|||||||||||||||||.||||||.|.||.||||||||||
RBAM_027090__     51 GGGATTGACCACCTTTTTCACAATGGTGTATATCATTGTCGTCAATCCGG    100

BSNT_04370___    101 TCATTCTGGCTAACGCCGGGGTTCCTTTCGACCAGGTGTTCACCGCAACG    150
                     |.||.||..|.||.||.||..||||.||.|||||||||||||||||.|||
RBAM_027090__    101 TGATCCTTTCCAATGCGGGAATTCCGTTTGACCAGGTGTTCACCGCGACG    150

BSNT_04370___    151 ATTATTGCCTCCATTGTCGGAACGCTGTGGATGGCCCTGGCAGCAAATTA    200
                     |||||.||.||||||||||||||..|.||||||||.||.||.||.||||.
RBAM_027090__    151 ATTATCGCTTCCATTGTCGGAACTTTATGGATGGCTCTCGCTGCGAATTT    200

BSNT_04370___    201 TCCGATTGCTATTGCGCCCGGCATGGGCTTGAACGCTTATTTAGCCTTTC    250
                     ||||||.||.|||||.||||||||||||||.|||||.|||.|.|||||||
RBAM_027090__    201 TCCGATCGCCATTGCCCCCGGCATGGGCTTAAACGCGTATCTCGCCTTTC    250

BSNT_04370___    251 ATGTCGTAAGCGCAAGCGATGGCGGCATCACGTACGCA-ACAGCTTTCAG    299
                     |.||.||..||.||.||   .|||||||.||||| .|| ||.||||||||
RBAM_027090__    251 ACGTTGTCGGCACAGGC---AGCGGCATTACGTA-TCAGACGGCTTTCAG    296

BSNT_04370___    300 CGCAGTATTTACAGCAGGGGTTCTCTTCATTATTCTATCGTTAACGCCTT    349
                     |||.||.||||..||.||.||..||||.||||||.|||||||||||||||
RBAM_027090__    297 CGCCGTTTTTATCGCGGGAGTCATCTTTATTATTTTATCGTTAACGCCTT    346

BSNT_04370___    350 TAAGAAAACAACTTATAGAAGCGATTCCAAACAATTTAAAATACGGGATC    399
                     ||||||||||||||||||||||||||||..||||||||||||||||.||.
RBAM_027090__    347 TAAGAAAACAACTTATAGAAGCGATTCCGGACAATTTAAAATACGGAATT    396

BSNT_04370___    400 ACAACTGGGATCGGGCTGTTTATTGCTTTTATCGGTTTGCGTCAAGCGGG    449
                     ||.||.||.|||||..|.|||||.|||||||||||.||.||.|||.|.||
RBAM_027090__    397 ACGACCGGCATCGGCTTATTTATCGCTTTTATCGGCTTACGCCAATCCGG    446

BSNT_04370___    450 CATTGTGGCAGCTGATGAGTCAAACCTGGTCACTCTCGGCAATCTGCATT    499
                     .||..|..|.||||||.|.||.||.||||||.|.||||||.||||.||||
RBAM_027090__    447 AATCATCACGGCTGATAAATCTAATCTGGTCGCACTCGGCGATCTTCATT    496

BSNT_04370___    500 CACCTGGTGTTATCTTAACGCTGGTTGGCCTTTTGATCAGCGTGGTCCTG    549
                     |.||.|..||.||.||||||||..|.||.|||.|.|||||..|.||.|||
RBAM_027090__    497 CGCCCGCCGTCATTTTAACGCTTATCGGACTTATCATCAGTATTGTACTG    546

BSNT_04370___    550 ATGGTGCTGAATGTAAGCGGCGCTTTATTTATCGGAATGGCAGCT-ACCG    598
                     ||||||||||||||.|.|||.|||.|.||.||||||||||| ||| ||||
RBAM_027090__    547 ATGGTGCTGAATGTTAACGGGGCTCTGTTCATCGGAATGGC-GCTGACCG    595

BSNT_04370___    599 CTTTGATCGCCTTTTTCACCGGTCAGCTCCATTTTCCAAAGGGATTTATG    648
                     |..|.||.||||||||.|||||.|||.|.|||||..|.||.|||||.|||
RBAM_027090__    596 CCGTCATTGCCTTTTTGACCGGGCAGATTCATTTCGCGAAAGGATTCATG    645

BSNT_04370___    649 TCGCTT-CCTCATTTGCCGGAAGGATTGATGATCTCAAATCCATTTACCG    697
                     || ||| ||.||..|||||||.||..|..|.|||.|||||||.||....|
RBAM_027090__    646 TC-CTTCCCGCACCTGCCGGAGGGGCTTTTAATCACAAATCCGTTCGGAG    694

BSNT_04370___    698 CTTTTGGCGATGTCATTCATCACGGCCTGTACGCTGTCGTCTTTTCTTTT    747
                     |..|.||.||||||.|.||||||||.||||||||.||.||.|||||||||
RBAM_027090__    695 CCCTCGGGGATGTCGTGCATCACGGTCTGTACGCCGTTGTGTTTTCTTTT    744

BSNT_04370___    748 CTATTAGTCACCATTTTTGATACGACAGGCACGATGATCGGAGTTGCCGA    797
                     ||..|.||.||.||||||||.|||||.|||||.||||||||.||.|||||
RBAM_027090__    745 CTTCTCGTTACGATTTTTGACACGACCGGCACCATGATCGGTGTCGCCGA    794

BSNT_04370___    798 GCAAGCCGGGCTGATGAAAAACAACAAGCTGCCTAACGTGC--GAAAAGC    845
                     .|||||.||.|||||.||||||||..|||||||.||  |||  |||.|||
RBAM_027090__    795 ACAAGCGGGACTGATCAAAAACAATCAGCTGCCGAA--TGCCAGAAGAGC    842

BSNT_04370___    846 GCTGCTTGCTGATTCAACAGCGACGACAGTAGG-AGCTGTTTTCGGCACA    894
                     ||||.|.|||||||||||.||.|||||.||.|| ||| .|.||||||||.
RBAM_027090__    843 GCTGTTGGCTGATTCAACCGCTACGACGGTGGGAAGC-ATCTTCGGCACC    891

BSNT_04370___    895 AGTCCGACGACCGCATTTATCGAATCTTCCGCCGGTGTCGCAGCCGGGGG    944
                     ||||||||||||||.||..|.||||||||.||.|||||.||.|||||.||
RBAM_027090__    892 AGTCCGACGACCGCGTTCGTTGAATCTTCAGCAGGTGTGGCGGCCGGCGG    941

BSNT_04370___    945 AAGAACGGGGCTTACGGCTTTGACTGTCGCGGTGATGTTTGCGGCTTCAA    994
                     |||||||||.||.|||||..||||..|.||.||.||||||||.|.|||.|
RBAM_027090__    942 AAGAACGGGTCTGACGGCGCTGACGATTGCCGTTATGTTTGCCGTTTCCA    991

BSNT_04370___    995 TGTTTTTCAGTCCGCTTGTCAGCGCCTTGTCCG--GTATAGCCGCCATCA   1042
                     ||||||||||.|||||||||||||.|||.||.|  ||.|  ||||.||.|
RBAM_027090__    992 TGTTTTTCAGCCCGCTTGTCAGCGTCTTATCGGAAGTGT--CCGCGATTA   1039

BSNT_04370___   1043 CCTCGCCTGCTTTGATTATCGTCGGCAGCTTGATGATGGGCTCGGTTTCC   1092
                     |.||.||.|||.|||||||.|||||||||.||||||||||..|.||.||.
RBAM_027090__   1040 CGTCACCGGCTCTGATTATTGTCGGCAGCCTGATGATGGGTGCTGTGTCG   1089

BSNT_04370___   1093 AATATGAACTGGAAAGAGATGGACGAGGCATTTCCAGCGTTTCTCGTCAT   1142
                     |||||...||||||.|||.|.||.||.||.||.||.||.|||||||||||
RBAM_027090__   1090 AATATCCGCTGGAATGAGCTTGATGAAGCGTTCCCGGCCTTTCTCGTCAT   1139

BSNT_04370___   1143 TCTGGCCATGCCTTTGACATCCAGCATTTCTACAGGAATTGCGCTTGGCT   1192
                     |.||||.||||||||.||.|||||.|||||.||.|||||.||.||.||||
RBAM_027090__   1140 TTTGGCGATGCCTTTAACGTCCAGTATTTCAACCGGAATCGCACTCGGCT   1189

BSNT_04370___   1193 TTATTTCATATCCGATCGTAAAAGCGGCGCGGGGAAAATGGAGAGAGATT   1242
                     |.||||||||||||.|.||.|||||.||...|..|||||||.|.||.||.
RBAM_027090__   1190 TCATTTCATATCCGCTTGTTAAAGCAGCTAAGAAAAAATGGCGCGAAATC   1239

BSNT_04370___   1243 CATCCGCTCGTCATCGTTTTCGCCATTCTGTTTTTCATCCAGCTGTTTAT   1292
                     |||||..|.||||||.|.||||||.|.||||||||.||.|||||.|||||
RBAM_027090__   1240 CATCCTTTAGTCATCATCTTCGCCGTGCTGTTTTTTATTCAGCTTTTTAT   1289

BSNT_04370___   1293 TTT--------ATAA-   1299
                     |||        ||.| 
RBAM_027090__   1290 TTTGAACGGTCATTAA   1305


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