Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04372 and RBAM_027110

See Amino acid alignment / Visit BSNT_04372 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:50
# Commandline: needle
#    -asequence dna-align/BSNT_04372___ythP.1.9828.seq
#    -bsequence dna-align/RBAM_027110___ythP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04372___ythP-RBAM_027110___ythP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04372___ythP-RBAM_027110___ythP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04372___ythP
# 2: RBAM_027110___ythP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 754
# Identity:     511/754 (67.8%)
# Similarity:   511/754 (67.8%)
# Gaps:          92/754 (12.2%)
# Score: 1629.5
# 
#
#=======================================

BSNT_04372___      1 TTGACA-AATTTGCTTGAAGCTTCAATAGAACA-------GGCCGGGTAT     42
                     |||..| ||||  .|||||  |.||    ||||       .|||||.|||
RBAM_027110__      1 TTGGGAGAATT--ATTGAA--TGCA----AACATTGTCTGCGCCGGTTAT     42

BSNT_04372___     43 ----ACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGAAGTCA---     85
                         |||.||||    ||.|||.|..|.|||||.|.||||..|||||   
RBAM_027110__     43 GCTGACAGGCCG----AAGGTGATTTCTGATGTATCTCTGTCAGTCAACG     88

BSNT_04372___     86 -----GAAAAGGGGAACTAGTT---GGACTGATCGGAGCTAACGGCGCCG    127
                          ||||           ||   ||..|.||||||||.||||||||.|
RBAM_027110__     89 CTGGTGAAA-----------TTACCGGTTTAATCGGAGCGAACGGCGCGG    127

BSNT_04372___    128 GAAAAAGCACCGCAATCAAGGCGATACTCGGCCTTTCAGAAGATTTTAAA    177
                     |.||||||||.|..||.||||||.|.|||||.||.||....|| |.||.|
RBAM_027110__    128 GGAAAAGCACAGTGATAAAGGCGGTTCTCGGGCTGTCCCGGGA-TATAGA    176

BSNT_04372___    178 GGGC--ATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCAT    225
                     ||||  | ||||..|||||.||.|..||.|.|||.||.||.|||||||.|
RBAM_027110__    177 GGGCGGA-ATTGAGTGGAATGATTCATCTTATGCTTACATACCGGAGCGT    225

BSNT_04372___    226 CCGTCCTTTTACGAAGAACTGACGCTGTGGGAGCATTTGGATCTGATCAG    275
                     |||...|||||.||.|||||||||||.|||||||||.|.||.||||.|.|
RBAM_027110__    226 CCGAGTTTTTATGATGAACTGACGCTTTGGGAGCATCTCGAGCTGACCGG    275

BSNT_04372___    276 CACACTCCACGGCATTGAAGGGAG-AGAATTTGTGC----ATCGGGCCCA    320
                     ..||.|.|..||.||.||| |||| ||||    |||    |.|||||   
RBAM_027110__    276 GTCATTGCGGGGTATAGAA-GGAGAAGAA----TGCCGTGAGCGGGC---    317

BSNT_04372___    321 AAGCCTGCTGC----AGACGTTTTCGCTTGA--TCATGTCAAACATGAGC    364
                     |.|.|.|||||    ||| |||||||| |||  || |||.||||||||..
RBAM_027110__    318 AGGGCGGCTGCTTGAAGA-GTTTTCGC-TGACGTC-TGTAAAACATGATT    364

BSNT_04372___    365 TGCCT----GTCACCTTTTCGAAGGGCATGCAGCAAAAACTAATGCTTAT    410
                     |||||    ||    |||||.||.||.||||||||||||.|.|||||.||
RBAM_027110__    365 TGCCTTCCGGT----TTTTCAAAAGGGATGCAGCAAAAATTGATGCTCAT    410

BSNT_04372___    411 CCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTA    460
                     .|||||.|||.|..|.|||||||||||.||..|.||||||||.||.||||
RBAM_027110__    411 ACAGGCATTTTTGGCGAAGCCGGATATTTACATCATTGATGAGCCTTTTA    460

BSNT_04372___    461 TCGGCCTTGATCCGATATCGACGAAACGCTTTGTGGACATGCTTAAGGCT    510
                     ||||.|||||||||||.||.|||||.|..|||...||||||||.|..|||
RBAM_027110__    461 TCGGACTTGATCCGATCTCAACGAAGCTGTTTACCGACATGCTGATTGCT    510

BSNT_04372___    511 GAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC    560
                     ||.||||||.|.||.||.||.|||.|.||||||||.|||||.||.|||||
RBAM_027110__    511 GAGAAAGAAAGGGGCGCGGGGATTTTGATGTGCACTCATGTTCTGGATAC    560

BSNT_04372___    561 CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTAT    610
                     .||||||||||||||.||||||||||||.||.|.||..|.||..|..|..
RBAM_027110__    561 GGCGGAAAAAATCTGCGACCGGTTTTATTTGCTGGATCAGGGCGCTCTGC    610

BSNT_04372___    611 TTCTCCAAGGCACGTTAAAAGATATTCAGGACAAGACCGGATTAGAGGGG    660
                     ||||.||||||||||||.|.||..|||||||.||.||       |.||.|
RBAM_027110__    611 TTCTTCAAGGCACGTTAGAGGAGCTTCAGGAAAAAAC-------GGGGAG    653

BSNT_04372___    661 CAG-TCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTG--ATCGGCT    707
                     |.| |||.||||.||.||.||||||...||.||||  ||.|  .||.||.
RBAM_027110__    654 CCGTTCACTGCTGGATTGCTTTTATTCAGCGGTTC--GGAGCAGTCAGCG    701

BSNT_04372___    708 ATGA    711
                     ||||
RBAM_027110__    702 ATGA    705


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