Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04377 and RBAM_027140

See Amino acid alignment / Visit BSNT_04377 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:51
# Commandline: needle
#    -asequence dna-align/BSNT_04377___ytgP.1.9828.seq
#    -bsequence dna-align/RBAM_027140___ytgP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04377___ytgP-RBAM_027140___ytgP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04377___ytgP-RBAM_027140___ytgP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04377___ytgP
# 2: RBAM_027140___ytgP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1659
# Identity:    1287/1659 (77.6%)
# Similarity:  1287/1659 (77.6%)
# Gaps:          45/1659 ( 2.7%)
# Score: 4867.0
# 
#
#=======================================

BSNT_04377___      1 ATGTCAAGCAAACTGTTAAGAGGCACGTTTGTATTAACGCTCGGTACATA     50
                     ||||||||||||.|||||||.||||||||.||..|.||||||||.||.||
RBAM_027140__      1 ATGTCAAGCAAATTGTTAAGGGGCACGTTCGTGCTGACGCTCGGCACCTA     50

BSNT_04377___     51 TATATCGCGGATTCTGGGGATGGTCTATTTAATTCCCTTC--AGCATTAT     98
                     |||||||||||||.|.||||||.|.|||.|.||.||.|||  |||  .||
RBAM_027140__     51 TATATCGCGGATTTTAGGGATGATTTATCTGATCCCGTTCGGAGC--GAT     98

BSNT_04377___     99 GGTCGGGGCGACAGGCGGTGCATTATTTCAATACGGATACAACCAATACA    148
                     ||||||.|||||.|||||.||.||.||||||||||||||.||.|||||.|
RBAM_027140__     99 GGTCGGAGCGACGGGCGGAGCTTTGTTTCAATACGGATATAATCAATATA    148

BSNT_04377___    149 CTTTATTTTTGAATATTGCTACGATGGGCTTTCCGGCCGCTGTTTCTAAA    198
                     |..|.|||||.||.|||||.||||||||.|||||.|||||.|||||.|||
RBAM_027140__    149 CACTGTTTTTAAACATTGCCACGATGGGATTTCCCGCCGCGGTTTCAAAA    198

BSNT_04377___    199 TTTGTTTCCAAATATAATTCAAAAGGGGATTATGAGACAAGCAGGAAAAT    248
                     |||||.||.||||||||.||.|||||.||.||||||||.||||||...||
RBAM_027140__    199 TTTGTCTCGAAATATAACTCCAAAGGAGACTATGAGACGAGCAGGCGGAT    248

BSNT_04377___    249 GCTCAAGGCGGGCATGTCGGTTATGCTCGTCACAGGAATGATAGCCTTTT    298
                     |||.|..|||||.|||||||||||||||||.||.||.|||||.| |||||
RBAM_027140__    249 GCTGAGAGCGGGAATGTCGGTTATGCTCGTAACCGGGATGATCG-CTTTT    297

BSNT_04377___    299 TC-ATTCTGTATCTATCGGCTCCGATGTTTGCGGAAATATCGCTGGGAGG    347
                     || |||||.|||.|.|||||.|||.|.||||||||||.|||.||.||.||
RBAM_027140__    298 TCAATTCTTTATATTTCGGCGCCGTTTTTTGCGGAAACATCTCTCGGCGG    347

BSNT_04377___    348 CAAGGATAATAACGG-CTTGACAATTGATCATGTCGTTTATGTCATCCGC    396
                     ||.|..|||.||||| ||| ||.|||||.||.|||||||||||||||||.
RBAM_027140__    348 CACGAGTAACAACGGACTT-ACGATTGACCACGTCGTTTATGTCATCCGG    396

BSNT_04377___    397 ATGGTCAGCTTAGCGCTTTTGGTCGTACCGATTATGAGCCTTGTCCGCGG    446
                     ||||||||..|.||.|||||||||||.|||||||||||.|||||.|||||
RBAM_027140__    397 ATGGTCAGTCTGGCACTTTTGGTCGTGCCGATTATGAGTCTTGTGCGCGG    446

BSNT_04377___    447 ATTCTTTCAAGGGCACCAAATGATGGGTCCGACAGCTGTTTCCCAAGTCG    496
                     .||.||.|||||.||.||.||||||||.||||||||.|||||.||.||.|
RBAM_027140__    447 TTTTTTCCAAGGTCATCAGATGATGGGGCCGACAGCCGTTTCACAGGTTG    496

BSNT_04377___    497 TTGAACAGATTGTCCGCATCATCTTTCTATTGAGTGCGACATTCTTGATT    546
                     |.||.|||.|||.|||.|||||||||.|||||.|.||.||.|..||||||
RBAM_027140__    497 TGGAGCAGCTTGCCCGGATCATCTTTTTATTGGGCGCAACGTATTTGATT    546

BSNT_04377___    547 TTGAAG-GTTTTCAACGGCGGCCTTGTCATCGCTGTGGGCTATGCAACCT    595
                     || ||| ||..||||||||||||||||||||||.||.||.||.||.||.|
RBAM_027140__    547 TT-AAGAGTGATCAACGGCGGCCTTGTCATCGCAGTCGGATACGCGACTT    595

BSNT_04377___    596 TCGCAGCGCTGATCGGTGCCTTCGGGGGGCTGGTCGTGCTTTATATTTAT    645
                     ||||.|||||||||||..|.|||||.|||||.|||||.|||||||||||.
RBAM_027140__    596 TCGCGGCGCTGATCGGATCATTCGGAGGGCTTGTCGTCCTTTATATTTAC    645

BSNT_04377___    646 TGGAACAAACGGAAGGGCAGCCTGCTGGCGATGATGCCGAATACGGGT-C    694
                     |||||.||.|||||||||...||.||||||||||.||||||| |..|| |
RBAM_027140__    646 TGGAATAAGCGGAAGGGCGATCTTCTGGCGATGAAGCCGAAT-CTCGTCC    694

BSNT_04377___    695 CGACAGCAAACCTAAGCTACAAAAAAATGTTTTTCGAGCTGTTCAGCTAT    744
                     ||.|.||.|||.||||.||.|||||||||||..|.|||||.|||||.|||
RBAM_027140__    695 CGTCTGCGAACTTAAGTTATAAAAAAATGTTCATTGAGCTTTTCAGTTAT    744

BSNT_04377___    745 GCTGCTCCGTACGTTTTTGTCGGACTAGCCATCCCTTTGTATAACTATAT    794
                     ||.|||||.|||||.|||||||||||.||.||.|||||||||...|||||
RBAM_027140__    745 GCCGCTCCTTACGTATTTGTCGGACTGGCGATTCCTTTGTATTCGTATAT    794

BSNT_04377___    795 TGATACAAATACGTTTAACAAAGCGATGATTGAAGCCGGTCATCAA-GCC    843
                     .|||||.|||||||||||.|||||||||||||..||.||.|| ||| |..
RBAM_027140__    795 CGATACGAATACGTTTAATAAAGCGATGATTGCGGCGGGCCA-CAAGGAT    843

BSNT_04377___    844 ATCAGCCAGGACATGCTTGCGATTCTAACCCTGTATGTTCAGAAGCTCGT    893
                     ||||||||||||||||||||||||.|.|||||.|||||.|.||||||.||
RBAM_027140__    844 ATCAGCCAGGACATGCTTGCGATTGTCACCCTTTATGTGCCGAAGCTTGT    893

BSNT_04377___    894 GATGATCCCGGTTTCCCTAGCAACTGCTTTCGGACTGACATTAATTCCAA    943
                     .||||||||||||||.||.||.||.||||||||.|||||..|.|||||.|
RBAM_027140__    894 CATGATCCCGGTTTCTCTGGCGACCGCTTTCGGTCTGACGCTGATTCCGA    943

BSNT_04377___    944 CGATTACTGAATCGTTTACAAGCGGAAACTATAAGCTGTTAAATCAGCAG    993
                     |||||||||||||||||||.|||.|.||.||||||||.||.||.||||||
RBAM_027140__    944 CGATTACTGAATCGTTTACGAGCAGGAATTATAAGCTTTTGAACCAGCAG    993

BSNT_04377___    994 ATTAATCAAACGATGCAGACGATCCTGTTTTTAATTATTCCGGCTGTTGT   1043
                     |||||.||.||||||||.|..||.||||||||..|||||||.||.|||||
RBAM_027140__    994 ATTAACCAGACGATGCAAATCATTCTGTTTTTGGTTATTCCCGCCGTTGT   1043

BSNT_04377___   1044 CGGGATCTCTCTATTGTCAGGACCGACGTATACGTTCTTTTACGGGTCAG   1093
                     ||||||.||..|.||.||.||.|||.|.|||||||||||.|||||.||.|
RBAM_027140__   1044 CGGGATGTCCGTGTTATCGGGTCCGGCCTATACGTTCTTCTACGGCTCTG   1093

BSNT_04377___   1094 AGAGCCTTCACCCTGAACTGGG---GGCAAACATTTTGCTATGGTATTCG   1140
                     |.||.||||.|||.||..|.||   ||   |.||.|||.|.|||||..||
RBAM_027140__   1094 AAAGTCTTCGCCCGGATATCGGACAGG---ATATATTGTTCTGGTACGCG   1140

BSNT_04377___   1141 CCAGTCGCGATTTTGTTCTCTTTGTTTACAGTCAACGCAGCCATTCTGCA   1190
                     ||.||||||||..||||.|||.|||||||.||.|||||.||.||.|||||
RBAM_027140__   1141 CCTGTCGCGATACTGTTTTCTCTGTTTACCGTAAACGCCGCGATCCTGCA   1190

BSNT_04377___   1191 GGGCATCAATAAGCAAAAATTTGCGGTTGTCAGCCTTGTGATCGGTGTCG   1240
                     .||.||.||||||||.||||||||.||.||.||||||.|.|||||.|||.
RBAM_027140__   1191 AGGGATTAATAAGCAGAAATTTGCTGTCGTGAGCCTTTTCATCGGCGTCA   1240

BSNT_04377___   1241 TGATCAAGCTTGTGCTGAATGTTCCGCTGATCAAGCTGATGCAGGCTGAC   1290
                     |.||.||..|.||||||||..|.|||||||||||||||.|.||||..|||
RBAM_027140__   1241 TTATAAAAGTGGTGCTGAACATGCCGCTGATCAAGCTGTTTCAGGGAGAC   1290

BSNT_04377___   1291 GGAGCGATTTTAGCGACGGCGCTTGGATATATCGCTTCCCTTTTATATGG   1340
                     ||.||.||.||.||.||||||||.||.|||||||||||.|||.|.||.||
RBAM_027140__   1291 GGGGCCATCTTGGCAACGGCGCTCGGTTATATCGCTTCTCTTCTGTACGG   1340

BSNT_04377___   1341 GTTTATCATGATTAAGCGCCATGCAGGCTATTCGTATAAGATACTAGTTA   1390
                     .|||||.|||||||||||||||||.|||||||||||||.|.||||..|.|
RBAM_027140__   1341 TTTTATTATGATTAAGCGCCATGCGGGCTATTCGTATACGGTACTTATAA   1390

BSNT_04377___   1391 AACGAACTG----TTTTGAT-GCTTGTATTATCAGCCATTATGGGTATTG   1435
                     ||||    |    ||||.|| || .||..|.||.|.|.|.|||||..|.|
RBAM_027140__   1391 AACG----GGTCATTTTAATCGC-AGTCCTGTCCGTCCTGATGGGAGTCG   1435

BSNT_04377___   1436 CCGTGAA----AATCGTGCAGTGGGTATTAGGCTTCTTTATTTCCTATCA   1481
                     |.||.||    |.|    ||.|||.|..|..||||||||.|..|.||.||
RBAM_027140__   1436 CGGTCAAGCTGACT----CAATGGCTGCTCAGCTTCTTTGTAACATACCA   1481

BSNT_04377___   1482 GGATGGCCAGCTGCAAGCTGCGATTGTTGTGGTGATC-GCGGCCGCTGTT   1530
                     ....||||||.||||.||.||||||||.||..|..|| || ||||||||.
RBAM_027140__   1482 AAGCGGCCAGGTGCATGCGGCGATTGTCGTCTTTGTCTGC-GCCGCTGTC   1530

BSNT_04377___   1531 GGCGGAGCTGTCTACCTGTATTGCGGC-TACCGATTAGGATTTTTACAGA   1579
                     |||||.||.||.|||.||| ||||.|| ||||||.|.|||||||||||||
RBAM_027140__   1531 GGCGGTGCGGTGTACATGT-TTGCCGCGTACCGAATCGGATTTTTACAGA   1579

BSNT_04377___   1580 AAATTTTAGGCCGCCGTTTGCCAGGTTTCTTAAGGAAAGGCAGACATGCA   1629
                     ||||.||.||...||||.||||..|..|.|||||||.||||||.|||.|.
RBAM_027140__   1580 AAATGTTTGGAAACCGTCTGCCCCGCGTTTTAAGGAGAGGCAGGCATTCC   1629

BSNT_04377___   1630 GGC---TGA   1635
                     |.|   |||
RBAM_027140__   1630 GCCCATTGA   1638


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