Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04407 and RBAM_027190

See Amino acid alignment / Visit BSNT_04407 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:52
# Commandline: needle
#    -asequence dna-align/BSNT_04407___msmE.1.9828.seq
#    -bsequence dna-align/RBAM_027190___msmE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04407___msmE-RBAM_027190___msmE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04407___msmE-RBAM_027190___msmE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04407___msmE
# 2: RBAM_027190___msmE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1313
# Identity:     955/1313 (72.7%)
# Similarity:   955/1313 (72.7%)
# Gaps:          67/1313 ( 5.1%)
# Score: 3304.0
# 
#
#=======================================

BSNT_04407___      1 ATGAAACACACTT--TTGTTTTATTTCTCTCTCTTATTCTGCTTG-TTCT     47
                     |||||  ||.|||  |.|.|||.|||||.|||.|||.| |||.|| |.||
RBAM_027190__      1 ATGAA--ACGCTTACTGGCTTTGTTTCTTTCTTTTACT-TGCATGATACT     47

BSNT_04407___     48 GCCCGGGTGTTCAGCAGAGAAAAGCTCAGCAGATACCGCAAAAAAG----     93
                     ..||||.||.||.|||||..|.|||      |...|||.|.|||||    
RBAM_027190__     48 TACCGGCTGCTCGGCAGAACAGAGC------GGCGCCGGAGAAAAGCAGA     91

BSNT_04407___     94 --ACGTTAACCATTTATTCTACAATGTCAACCGACAGTGAAAGAGATACG    141
                       ||.||.||..|.|||||.||.||.||..|.|||||.|||.|.|  .||
RBAM_027190__     92 AAACATTGACAGTCTATTCCACCATATCCTCAGACAGCGAACGCG--CCG    139

BSNT_04407___    142 --TTCAGAAAACTGGCGGCAGCATTCGAAAAGGAACA-CAGTGACATTCA    188
                       ||||||||..||||.|...|||||.||||.||||| |.| ||.|||||
RBAM_027190__    140 TATTCAGAAAGTTGGCTGATTCATTCCAAAAAGAACATCCG-GATATTCA    188

BSNT_04407___    189 TGTCAGCCTTCATTTCCCAGGCAATGACTATGAAAATATGATGCGTGTCA    238
                     .||.|.|.||||||||||||||||||||||.||||||||||||.|.||||
RBAM_027190__    189 AGTAAACGTTCATTTCCCAGGCAATGACTACGAAAATATGATGAGGGTCA    238

BSNT_04407___    239 GAATGGCGGCCAATGATTTGCCTGATCTATTCGATACACATGGCTGGGGG    288
                     |||||||.|||..|||..||||.|||||.|||||.|||||.|||||||..
RBAM_027190__    239 GAATGGCAGCCGGTGACATGCCCGATCTTTTCGACACACACGGCTGGGCC    288

BSNT_04407___    289 AAAATCAGGTACGGAGAATATACAGCGGATCTCCGGGATATGGAATGGAC    338
                     ||||||.|.||||||||||||||.||.||.|||.|.|..|||...|||||
RBAM_027190__    289 AAAATCCGCTACGGAGAATATACCGCCGACCTCAGCGGCATGTCTTGGAC    338

BSNT_04407___    339 TCAAG-ATCTTGATCCCAATTTAAACAGCATCCTCAAAAA---TAAAAGC    384
                      .||| ..||.|||||.|||||||||||.||.||||||.|   .|||.||
RBAM_027190__    339 -GAAGCGGCTCGATCCGAATTTAAACAGTATGCTCAAAGACGCCAAAGGC    387

BSNT_04407___    385 GGAAAGGTGTATGCCTATCCGATCAATCAGGCAAAAGACGGTCTGGCGTA    434
                     .|||   |.||.||||..||..|.|||||||||||.|||||.|||||.||
RBAM_027190__    388 AGAA---TATACGCCTTCCCTCTGAATCAGGCAAAGGACGGACTGGCCTA    434

BSNT_04407___    435 TAACCGCA-ATATTTTGGACCGTTACGGCATTGCTCCGCCGGAAACCATG    483
                     .||.|||| || |.|||||....|||||.||....|||||||||||.|||
RBAM_027190__    435 CAATCGCACAT-TGTTGGAAAAATACGGAATCAAACCGCCGGAAACAATG    483

BSNT_04407___    484 GATGACTTTATCAAAGCACTGAGAACGATTAAAGAAAAGAGCAAGGGAAG    533
                     |||||.|||||.||.|||.|||||..||||||||||||.|||...|||| 
RBAM_027190__    484 GATGATTTTATGAAGGCATTGAGACAGATTAAAGAAAAAAGCGGCGGAA-    532

BSNT_04407___    534 CATTGTTCCC-TTCTGGTTTGCCGGCTATGACAAAAGCTCATTCGCTCAA    582
                     ||.|..|||| ||||||||||||||||||||.|||||||||||.||.|||
RBAM_027190__    533 CAGTCATCCCTTTCTGGTTTGCCGGCTATGAGAAAAGCTCATTTGCCCAA    582

BSNT_04407___    583 TATTACGACCAATTCGCTACACCTCTTCTCATCACAGACCCTGCCCATAA    632
                     ||||||||.||||||||..||||.||||||||||||||.||.||.||...
RBAM_027190__    583 TATTACGATCAATTCGCCGCACCGCTTCTCATCACAGATCCCGCACACCG    632

BSNT_04407___    633 TGAAAAAAAACAGCTCATCAACGGCACTTTTCAATGGAATAAATTTACTT    682
                     |.|.||||||||.||..|.|||||.||.||.|..||||...|.||.||.|
RBAM_027190__    633 TTACAAAAAACAACTGTTAAACGGAACCTTCCGCTGGACACACTTCACCT    682

BSNT_04407___    683 GCTTATC--AAAAATCCTCAAACAAATGCAGAAAGAAAAATTGATCAATA    730
                     ..|||||  |.|||  ||.|||.|.|||||.||.|||||..||.||||||
RBAM_027190__    683 ATTTATCTGACAAA--CTGAAAGAGATGCAAAAGGAAAACCTGCTCAATA    730

BSNT_04407___    731 TCGACGCCGTCACGGCAAAAAAATCACAGCTCATCGAATTAATGGCCCAA    780
                     |.||.||.||.|||||||||...||.||||||||.|||.|.|||||.|||
RBAM_027190__    731 TAGATGCTGTGACGGCAAAACGGTCCCAGCTCATTGAACTGATGGCGCAA    780

BSNT_04407___    781 AACAAAATCGCCTTTACAATGCAAGGCGGCACCCTCGGCCAAGACGTTGC    830
                     |||||||||||||||||..||||.||||||||.||||||||||||||.||
RBAM_027190__    781 AACAAAATCGCCTTTACGCTGCAGGGCGGCACTCTCGGCCAAGACGTCGC    830

BSNT_04407___    831 CCAGATCAACTCTAACGTCGAGGTCGGCATTATCCCGACACCTGCCATCC    880
                     .||.|||||..|.||.||..|.||||||||.||.|||||.||.|||.|||
RBAM_027190__    831 TCAAATCAATCCGAAGGTAAAAGTCGGCATCATACCGACCCCGGCCGTCC    880

BSNT_04407___    881 ATCCCGGTGATGACCCGATATGGATCGGCGGTGAACGCTACACGCTTGCA    930
                     |....||.||.|..|||.|.||||||||.||.|||||.||||||||.||.
RBAM_027190__    881 ACAAGGGAGACGCGCCGGTTTGGATCGGAGGCGAACGTTACACGCTGGCG    930

BSNT_04407___    931 GCATGGAAAGATTCGTCTCAATTAAAAGAGGCAAAAGAATTTATCGCATT    980
                     ||||..||.|||||..|.|...|..||||.||.|||.|.|||||||||||
RBAM_027190__    931 GCATTCAAGGATTCCCCGCGGCTTGAAGAAGCGAAACAGTTTATCGCATT    980

BSNT_04407___    981 TATGGCCCG-CCCG-GCCAATGCCAAACAAATGGCTGAAGCCACATCGCT   1028
                     ||||||||| |||| ||  |.||.|||..|||.||.|||||.||.|||||
RBAM_027190__    981 TATGGCCCGACCCGAGC--ACGCAAAATCAATTGCCGAAGCGACCTCGCT   1028

BSNT_04407___   1029 TCCTTCAGGGC--------TGACCAATGTGAAAGCTGATATTTTCTACGC   1070
                     |||     |||        ||   ||||||.||.|.||.|||||||||||
RBAM_027190__   1029 TCC-----GGCCGGATTAGTG---AATGTGCAAACGGACATTTTCTACGC   1070

BSNT_04407___   1071 AAACGATTATGAGCATTATCAAGATGTCAAAGTCGAGCCTTACTTCGACC   1120
                     |||.||.|||.|||..|||||..||.|.||.||..|||||||.||.||||
RBAM_027190__   1071 AAATGACTATAAGCGCTATCAGCATATTAAGGTGCAGCCTTATTTTGACC   1120

BSNT_04407___   1121 GGTTATACTTGCCAAACGGAATGTGGGATGTCCTGGGCACGGTTGGGCAG   1170
                     |..|.||.|||||.|||||||||||||||||..||||.||.|..||||||
RBAM_027190__   1121 GCCTTTATTTGCCGAACGGAATGTGGGATGTGATGGGAACAGCCGGGCAG   1170

BSNT_04407___   1171 GAGCTCGCGGCTGACATTTTGGCGCCTCAAGACATTTC-GCAGAAGCTGG   1219
                     |||||...|||.||.||.||..|.||....||.||||| || |||.||.|
RBAM_027190__   1171 GAGCTGATGGCCGATATCTTAACCCCCGCTGAAATTTCAGC-GAAACTCG   1219

BSNT_04407___   1220 GAAGAGAATATAAACGACTCCGGGAGCAATCGGAAACACAGGGAGCTG-A   1268
                     |.||.||||||||.||.||||||...|||||.||..|||.|||||||| |
RBAM_027190__   1220 GCAGGGAATATAAGCGGCTCCGGCTTCAATCTGATTCACGGGGAGCTGAA   1269

BSNT_04407___   1269 AAACAATGAGTGA   1281
                     |||.|||||    
RBAM_027190__   1270 AAAGAATGA----   1278


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.