Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_05879 and RBAM_027290

See Amino acid alignment / Visit BSNT_05879 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:23
# Commandline: needle
#    -asequence dna-align/BSNT_05879___ywaF.1.9828.seq
#    -bsequence dna-align/RBAM_027290___ywaF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05879___ywaF-RBAM_027290___ywaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05879___ywaF-RBAM_027290___ywaF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05879___ywaF
# 2: RBAM_027290___ywaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 797
# Identity:     479/797 (60.1%)
# Similarity:   479/797 (60.1%)
# Gaps:         160/797 (20.1%)
# Score: 1303.0
# 
#
#=======================================

BSNT_05879___      1 TTGCAAAAATATGTTCAATCCGACTAT-AAGCATGATCCGTTTCATCTGT     49
                     .||||.|.||||.||||||...|.|.| ||.||.|..|| ||||||||.|
RBAM_027290__      1 ATGCAGAGATATTTTCAATTGAAATCTGAAACAGGGGCC-TTTCATCTAT     49

BSNT_05879___     50 TTTCGACAGAGCACGTAGTGACGTTAGCGATTATCGCCCTTTTGGCCATT     99
                     ||||.|..||.|||               |||.||.|.|||||||.|| |
RBAM_027290__     50 TTTCCAAGGAACAC---------------ATTTTCACGCTTTTGGTCA-T     83

BSNT_05879___    100 CTG-TTGTTTTTGTTCCAAGATGGGGT------------------CAAGC    130
                     |.| |||.|            ||||||                  .||.|
RBAM_027290__     84 CGGATTGCT------------TGGGGTGTGCGTGATCGTATTCCGGAAAC    121

BSNT_05879___    131 AGC----CGAGGGCCAGCCGGTTTTTGCGTTCTCTG-TTTG---TGTTTC    172
                     |||    |.|.||||.|.||  ..|.|||||.||.| |.||   ||||..
RBAM_027290__    122 AGCTCAACTACGGCCGGTCG--AATCGCGTTTTCCGCTATGTACTGTTCA    169

BSNT_05879___    173 TTTTGCTTG--GT-TCGCAAATCGGCTATCAAATATGGATG----GTC--    213
                     ||.|.||||  || |||||.|||.|||||||.||||||.||    |||  
RBAM_027290__    170 TTCTCCTTGCCGTGTCGCAGATCAGCTATCATATATGGCTGCTTTGTCAT    219

BSNT_05879___    214 ---GCCACGGGCAGGTGGTCGGTGCGCACTTCATTGCCTCTCCAGCTTAG    260
                        |||         ||||||.||...||..|..||||.||.|||||.||
RBAM_027290__    220 CATGCC---------TGGTCGCTGAAAACAGCTCTGCCGCTGCAGCTGAG    260

BSNT_05879___    261 TGACCTGTCGGTGTATTTGTCAGCTA---TTATGTTAGTGACAAAAAGCA    307
                     .|||||.||.||.||||||   ||.|   |.|||.|..||||||||||||
RBAM_027290__    261 CGACCTTTCCGTCTATTTG---GCGATGCTGATGGTCATGACAAAAAGCA    307

BSNT_05879___    308 GAAAGCTGTTTGTGTTTTTGTTTTTTGCCGGCATCGGCAGTTCGATTCAG    357
                     .|||.|||||.|..||..|.|.|||||||||..|.|||||..|..|.|||
RBAM_027290__    308 AAAAACTGTTCGCCTTCCTCTATTTTGCCGGTTTGGGCAGCGCCGTACAG    357

BSNT_05879___    358 GCTCTTGCCACTCCTGACCTCGGAATGTTTTCATTTCCGCATATCCGATA    407
                     ||..|.||.||.|||||..|.||...||.|||.||.||.|||.|.||.||
RBAM_027290__    358 GCGATGGCAACACCTGATTTAGGGGCGTATTCTTTCCCTCATTTTCGGTA    407

BSNT_05879___    408 TATCCTCTTTTTTATTTCTCACGGGTCTGTGTTTTTAT--CCTGTCTGCT    455
                     .|||.|.|||||..|.||.|||||  ||||||||||.|  ||||.||..|
RBAM_027290__    408 CATCGTGTTTTTCGTCTCCCACGG--CTGTGTTTTTCTTACCTGCCTATT    455

BSNT_05879___    456 GATGGCTGTGATTGGCACCAACAGAATGG--------GCCAGCGCTCG--    495
                     .|||||.|          |..|||||.||        |.|.||||.||  
RBAM_027290__    456 CATGGCCG----------CTTCAGAAAGGTACAGACCGTCGGCGCGCGGA    495

BSNT_05879___    496 TTATGGGTGACAGTCCTGCTTGTTAATGTGTAC--GGCGTCTGTATTTTC    543
                     .|.||||||.|.||.|||.|.||.|||.|||||  |||||.|||.|||| 
RBAM_027290__    496 CTGTGGGTGTCTGTGCTGATCGTAAATCTGTACGGGGCGTGTGTCTTTT-    544

BSNT_05879___    544 CTGATTGATCGCTG-GCTTGGCGCGAATTATATGTATTTGACGAAAAAAC    592
                      |.|||||||| || |||....||||||||..|.|||||.|.||||||||
RBAM_027290__    545 -TTATTGATCG-TGTGCTGAATGCGAATTACTTATATTTAATGAAAAAAC    592

BSNT_05879___    593 CG--GGCGGATCCTCTCTCTTAGATGTTCTCGGGCCATGGCCATGGTATA    640
                     ||  |.|.|.|.|.|| |||.| |.|||.||||.||.|||||.|||  ||
RBAM_027290__    593 CGAAGACCGCTTCGCT-TCTGA-ACGTTTTCGGACCTTGGCCGTGG--TA    638

BSNT_05879___    641 TCGTCTCGGCTGAAGCCATCA----------CGG-----TCGCCAGCTTT    675
                     ||.|||           ||||          |||     |.|  ||||||
RBAM_027290__    639 TCTTCT-----------ATCAATGGAAGCGGCGGTGATATTG--AGCTTT    675

BSNT_05879___    676 TTCATTCTTTATATGC--TTTATCGCATCTTCA--AAAA----ATGA    714
                     ||||||||.|||||.|  ||| |.|| |..|.|  ||||    ||||
RBAM_027290__    676 TTCATTCTGTATATTCCGTTT-TGGC-TGCTGAGGAAAAGAGCATGA    720


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05879 and RBAM_027290

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
