Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04433 and RBAM_027370

See Amino acid alignment / Visit BSNT_04433 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:54
# Commandline: needle
#    -asequence dna-align/BSNT_04433___ytrD.1.9828.seq
#    -bsequence dna-align/RBAM_027370___ytrC1.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04433___ytrD-RBAM_027370___ytrC1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04433___ytrD-RBAM_027370___ytrC1.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04433___ytrD
# 2: RBAM_027370___ytrC1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1140
# Identity:     618/1140 (54.2%)
# Similarity:   618/1140 (54.2%)
# Gaps:         315/1140 (27.6%)
# Score: 1374.5
# 
#
#=======================================

BSNT_04433___      1 ---ATGCC----GGATTCCGGTCTGCTTTATAAGGAGTGGAAACAAAATA     43
                        ||.||    ||||       ||.|.||.|..||.|||||..||||| 
RBAM_027370__      1 ATGATACCGCGGGGAT-------TGTTGTACACAGAATGGAAGAAAAAT-     42

BSNT_04433___     44 AAGTCGCCTTAGTTATCACCATTTTGGTTTTTATAC-------------T     80
                     .|||.|                  |.||||||||.|             |
RBAM_027370__     43 CAGTGG------------------TTGTTTTTATGCAGCGGCATTCTTTT     74

BSNT_04433___     81 A-----GGTAATCC--TTTATCGATTTTCAATATGTATCT-TACCTATCA    122
                     |     ||.||.||  ||||| |.|||..||.|..|| || .||.|||||
RBAM_027370__     75 AATGGCGGCAAACCCTTTTAT-GGTTTATAACAACTA-CTCAACATATCA    122

BSNT_04433___    123 AGGCTGT----GTCACCTCAAAAG------AAAATTGGGTTGGTCCCTGC    162
                     ||..|||    .|.|||    |||      ||.||            ||.
RBAM_027370__    123 AGAATGTTTGAATAACC----AAGCTCTTCAAGAT------------TGT    156

BSNT_04433___    163 GTATTCGGTGTTGATTATTTAAACGG--CACATTTATCTCATTTTTT---    207
                     |.|||||.|||..|||||...||.||  |.|      |||.||..||   
RBAM_027370__    157 GAATTCGTTGTCAATTATACGAATGGGTCGC------CTCTTTCCTTCAG    200

BSNT_04433___    208 -TGGATTTGGGGAGTCGTTTTGGCGGTC--------AGCCAGCTTGGGAT    248
                      ||||.|....|.|||.|..|.||.|||        ||   |||||    
RBAM_027370__    201 CTGGAGTGTAAGTGTCATCATTGCTGTCTTCTTATTAG---GCTTG----    243

BSNT_04433___    249 TGAACGTAGCAA-------GA--GCTTCTTTGATTTTACATTAAGCCTAC    289
                      |||||.| |||       ||  |.|.|||||        ||||||.|.|
RBAM_027370__    244 -GAACGGA-CAAAGGGAACGATGGATGCTTTG--------TTAAGCATGC    283

BSNT_04433___    290 CATATA-CACGAGGGCAGATATTTCATGCGAAGTTCTTTAC-CGGCGGAA    337
                     |.||.| || ||||.||.||.|||||..||||.|| ||..| ||||||..
RBAM_027370__    284 CTTACAGCA-GAGGCCAAATCTTTCAGACGAAATT-TTGGCTCGGCGGGG    331

BSNT_04433___    338 TGGTGATTGTGGTGCCGCAGCTCATAGGTTA--------CGTTTTGTCTG    379
                     ..||.|||||.||.||.|||...|||||.||        |||        
RBAM_027370__    332 CAGTCATTGTTGTTCCTCAGGCGATAGGCTATGGAGCGGCGT--------    373

BSNT_04433___    380 TTTTGCTGATCATGCTTT--TGA-----AGCCA-------GATCAGGCCG    415
                     ..|||||||| || ||||  |||     |||||       |||       
RBAM_027370__    374 CATTGCTGAT-AT-CTTTGCTGAAACCGAGCCATACGTACGAT-------    414

BSNT_04433___    416 TTT----ATTTTCACAATTACAGCCTTGGGATGATCATTGTCAGCA---T    458
                     |||    ||||| .|||         |.|||  ||.|||||||.||   |
RBAM_027370__    415 TTTGATCATTTT-TCAA---------TCGGA--ATGATTGTCATCAGTTT    452

BSNT_04433___    459 GCTGGCTTATTCG-CTTGTT-ATGGCGGGTGGAGCTCTGACAGGCAATAT    506
                     ..|||||||  || |||||| |||||....||.||..|.||.||..|.||
RBAM_027370__    453 TATGGCTTA--CGCCTTGTTAATGGCATCCGGCGCATTAACGGGACAGAT    500

BSNT_04433___    507 TTTTGCCCAGCTTTT---GGTCTCATTTACCGT---GGCCATTTC-GCCA    549
                     .||.||||||||.||   ||   |.|||||.||   ||    ||| |||.
RBAM_027370__    501 ATTCGCCCAGCTGTTAACGG---CGTTTACAGTAACGG----TTCTGCCC    543

BSNT_04433___    550 TTTTTGCTCA----TCAGCCTGCCTGCGATCAACCTCGAGATC-------    588
                     |||||.||||    ||.|||.||| |||   ||..|.|||.||       
RBAM_027370__    544 TTTTTACTCATTGGTCTGCCGGCC-GCG---AATTTGGAGGTCGTTTTCG    589

BSNT_04433___    589 --CTTATTGGCG--GATCAA---TCGATTTTATCCATGGTCCAG---TAC    628
                       .|||.||.||  ||||||   ||  |||||||     ..|||   ||.
RBAM_027370__    590 ATATTAGTGTCGGAGATCAATTTTC--TTTTATC-----AGCAGTTATAT    632

BSNT_04433___    629 CCAAATGGGTGCAGTATTT---CATT-------CCTATAATTTATGT---    665
                     |.||     |.|.||.|||   .|||       |||||....|||||   
RBAM_027370__    633 CGAA-----TCCCGTCTTTTTATATTTGTAACCCCTATTGGATATGTGTT    677

BSNT_04433___    666 ---AGAC----TCA---AAATGGGCTGAGAATTCACCATATT---ATTTA    702
                        .|||    |||   |||.||                |||   .||||
RBAM_027370__    678 TAACGACTGGATCAGAGAAAGGG----------------ATTTGGTTTTA    711

BSNT_04433___    703 GTGATTCCGGCTATCATGACTATCATCTTCTACATCATCGGCTATATTAG    752
                     .|.||||||..|.|.||||...|..||||.||..|.|||||.|||.|.||
RBAM_027370__    712 ATCATTCCGATTGTGATGAGCCTTGTCTTTTATCTGATCGGTTATGTCAG    761

BSNT_04433___    753 CTTTGTCAAACTGTCTAATGAAAGAAACGG-ATATTTCTTCTTATGG---    798
                     ||||.|.||||...|.||||||.|.||||| |.|||..||||| |||   
RBAM_027370__    762 CTTTCTGAAACACCCGAATGAACGGAACGGCAGATTCTTTCTT-TGGAGA    810

BSNT_04433___    799 -AAGCCGCTT-AACCGCCCGGTGCAGATCATCGTTATTATCATAGGAATC    846
                      ||     || .||||.||||||||||||.|.||.|||..|.|.|...|.
RBAM_027370__    811 AAA-----TTGGACCGTCCGGTGCAGATCTTGGTGATTGCCTTTGCTGTT    855

BSNT_04433___    847 ATGGGGTTTGGCTATTTTGGATTTTCTGCCAGCGAGA-GCTTTACAGGCT    895
                     |||||.||.|||..|||.||||.|...|.||..||.| |.|.|.| ||||
RBAM_027370__    856 ATGGGTTTCGGCGTTTTCGGATATGGGGTCACAGACACGATGTTC-GGCT    904

BSNT_04433___    896 ATCT------CATTGGCATGGCTGCCGGCGCGGTAATCGGTTTCTTGATT    939
                     ||.|      ||||..|.|      |||||||||.|||||.||.||.||.
RBAM_027370__    905 ATTTAGCCGGCATTATCTT------CGGCGCGGTTATCGGGTTTTTCATC    948

BSNT_04433___    940 AGTTATTTTGCGATTTATAAAAAAATGAAA-CTTTTGTAA    978
                     |||||||||.||.|||| .|..||.|.||| |.|.||||.
RBAM_027370__    949 AGTTATTTTACGGTTTA-CAGGAAGTCAAAGCATATGTAG    987


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