Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04452 and RBAM_027600

See Amino acid alignment / Visit BSNT_04452 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:57
# Commandline: needle
#    -asequence dna-align/BSNT_04452___ytmA.1.9828.seq
#    -bsequence dna-align/RBAM_027600___ytmA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04452___ytmA-RBAM_027600___ytmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04452___ytmA-RBAM_027600___ytmA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04452___ytmA
# 2: RBAM_027600___ytmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 785
# Identity:     577/785 (73.5%)
# Similarity:   577/785 (73.5%)
# Gaps:          22/785 ( 2.8%)
# Score: 2016.0
# 
#
#=======================================

BSNT_04452___      1 TTGATTGTAGAGAAAAGAAGATTTCCGTCGCCAAGCCAGCATGTGCG---     47
                     |||.|.|||||.||.|.|||.||.|||||.||.||.|.||||.|.||   
RBAM_027600__      1 TTGCTGGTAGAAAAGAAAAGGTTCCCGTCTCCGAGTCCGCATATCCGCCT     50

BSNT_04452___     48 -TTTGTATACGATCTGCTATCTGTCA-AATGGATTACGGGTTAAGGGGCT     95
                      ||||    .|.|.||||||..|||| ||.||.|.| .|||.||||||||
RBAM_027600__     51 CTTTG----AGGTATGCTATGAGTCAGAAGGGCTGA-AGGTAAAGGGGCT     95

BSNT_04452___     96 TCTGGCTGAGCCGGCGGAACCGGGACAATATGACGGATTTTTATATTTGC    145
                     |||.||.|||||.||||..||||||..|||||||||.|||||||||||||
RBAM_027600__     96 TCTTGCCGAGCCTGCGGCGCCGGGAACATATGACGGTTTTTTATATTTGC    145

BSNT_04452___    146 GCGGCGGGATTAAAAGCGTGGGCATGGTTCGGCCGGGCCGGATTATCCAG    195
                     |||||||.||.||||..||.||||||||.||.||.||..|.||..|.||.
RBAM_027600__    146 GCGGCGGCATAAAAAATGTCGGCATGGTACGCCCCGGAAGAATCGTTCAA    195

BSNT_04452___    196 TTTGCATCCCAAGGGTTTGTGGTGTTTGCTCCTTTTTACAGAGGCAATCA    245
                     ||.||.||||||||.|||||.||||||||.||.|.||||||||||||.||
RBAM_027600__    196 TTCGCTTCCCAAGGCTTTGTCGTGTTTGCGCCCTATTACAGAGGCAACCA    245

BSNT_04452___    246 AGGAGGAGAAGGCAATGAGGATTTTGCCGGAGAAGACAGGGAGGATGCAT    295
                     .||.||.||.||.|||||.||||||||.|||||.|||||.|||||.||.|
RBAM_027600__    246 GGGCGGCGAGGGAAATGAAGATTTTGCGGGAGAGGACAGAGAGGACGCGT    295

BSNT_04452___    296 TTTCTGCTTTTCGCCTGCTTCAGCAGCACCCAAATGTCA-AGAAGGATAG    344
                     ||||.|||||.||||||||||.|.||||.||.||.|||| |||||| ..|
RBAM_027600__    296 TTTCCGCTTTCCGCCTGCTTCGGGAGCAACCGAACGTCAGAGAAGG-GCG    344

BSNT_04452___    345 AGTCCACATCTTCGGCTTTTCTCGCGGCGGAATTATGGGAATGCTT---A    391
                     .||.||.||.|||||.|||||.||.||||||||.|||||   ||||   |
RBAM_027600__    345 GGTGCATATTTTCGGTTTTTCCCGGGGCGGAATCATGGG---GCTTTTGA    391

BSNT_04452___    392 CTGCTATCGAAATGGGCGGGCAGGCAGCTTCATTTGTTTCCTGGGGAGGC    441
                     |.||.||.||||||||....||.||.|||||..|.||.||.|||||.||.
RBAM_027600__    392 CCGCGATTGAAATGGGGCATCAAGCGGCTTCGCTCGTATCATGGGGCGGT    441

BSNT_04452___    442 GTCAGTGATATGATTCTTACATACGAGGAGCGGCAGGATTTGCGGCGAAT    491
                     ||.||.||||||.|.|||||.||.||.||||||.|||||.|||||||.||
RBAM_027600__    442 GTGAGCGATATGGTGCTTACTTATGAAGAGCGGAAGGATATGCGGCGGAT    491

BSNT_04452___    492 GATGAAAAGAGTCATCGGCGGAACACCGAAAAAGGTGCCTGAGGAATATC    541
                     ||||||..|.||.|||||.||.||.||||||||||||||.||.||||| |
RBAM_027600__    492 GATGAAGCGGGTGATCGGAGGCACGCCGAAAAAGGTGCCGGATGAATA-C    540

BSNT_04452___    542 A-ATGGAGGACACCGTTTGACCAAGTAAACAAAATTCAGGCTCCCGTGCT    590
                     | ||||.|..|.||||||||..|.|.|.||...||||||||.||.|||||
RBAM_027600__    541 AGATGGCGTTCGCCGTTTGAAAACGCAGACCGCATTCAGGCCCCTGTGCT    590

BSNT_04452___    591 GTTAATCCATGGAGAAAAAGACCAAAATGTTTCGATTCAGCA-TTCCTAT    639
                     ..|.|||||||||||.||.||..|.|||||||||||..|.|| ..||.|.
RBAM_027600__    591 ACTCATCCATGGAGAGAATGATGAGAATGTTTCGATCGAACACGCCCGAA    640

BSNT_04452___    640 TTATTAGAAGAGAAGCTAAAACAACTGCATAAGCCGGTGGAAACATGGTA    689
                     |.| |.||.||.|||||.|||.|...|...||.|||||||||||.|||||
RBAM_027600__    641 TGA-TCGAGGACAAGCTGAAAGAGGCGGGGAAACCGGTGGAAACTTGGTA    689

BSNT_04452___    690 CTACAGTACATTCACACATTATTTCCCGCCAAAAGAAAACCGGCGTATCG    739
                     .|||||....||.||.||||||||.|||||..|.||||||.|.||.||.|
RBAM_027600__    690 TTACAGCGGTTTTACGCATTATTTTCCGCCGCAGGAAAACAGACGCATTG    739

BSNT_04452___    740 TGCGGCAGCTCACACAATGGATGAAAAACCGCTGA    774
                     |.||||.|||..|..||||||||||.|..||.|.|
RBAM_027600__    740 TCCGGCGGCTGGCGGAATGGATGAAGACACGGTAA    774


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