Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04463 and RBAM_027670
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:58
# Commandline: needle
# -asequence dna-align/BSNT_04463___ytkA.1.9828.seq
# -bsequence dna-align/RBAM_027670___ytkA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04463___ytkA-RBAM_027670___ytkA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04463___ytkA-RBAM_027670___ytkA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04463___ytkA
# 2: RBAM_027670___ytkA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 497
# Identity: 302/497 (60.8%)
# Similarity: 302/497 (60.8%)
# Gaps: 112/497 (22.5%)
# Score: 837.0
#
#
#=======================================
BSNT_04463___ 1 ATGAAAAAG---ATGTTGG-----TTGT----TCTGCTTTTTTCTGCTTT 38
||||||..| .|.|||| .||| |.||||.||| ||.|
RBAM_027670__ 1 ATGAAACGGGCTGTATTGGCAGGTATGTGCGGTATGCTATTT----CTAT 46
BSNT_04463___ 39 TTTGCTT-----------AAT--GGA---------TGCGGATCTGGTGAA 66
|.| ||| ||| ||| .||||| ||||
RBAM_027670__ 47 TAT-CTTCCTGCGGGGGCAATTCGGACAAAACCTCCGCGGA-----TGAA 90
BSNT_04463___ 67 -AGC--AAAGCAAATACAGC-TGAGACGCCCGAGGTTTTGGATGTCAAGC 112
||| ||||| || |||| |||||||
RBAM_027670__ 91 GAGCCTAAAGC-------GCTTGAG------------------GTCAAGC 115
BSNT_04463___ 113 TGACCGGGCCTGAAA---AAGTAAATCCCG---GAGAAAGCGCTGCTTAT 156
|.||.||.||.|||| .||.| ||| ||.|||||| |..||.
RBAM_027670__ 116 TTACAGGACCGGAAACGGCAGCA----CCGCATGAAAAAGCG--GAATAC 159
BSNT_04463___ 157 GAAGCAGCCGTATCATATGGTGATG-AAGC-TGTGACGGATGCCGATGAA 204
.|.||.|..||.|..||.||.| | |||| |||.||||||||.||||||
RBAM_027670__ 160 AAGGCGGAAGTTTTTTACGGCG--GCAAGCGTGTCACGGATGCGGATGAA 207
BSNT_04463___ 205 GTAGAGTTTGAAGTATGGAAAGAAGGGGAAAAAGACGCA--AGCCAAATG 252
||...||||||||||||||||||| |||||||.|.||| |||.|||..
RBAM_027670__ 208 GTCATGTTTGAAGTATGGAAAGAA--GGAAAAAAAGGCAGCAGCAAAACA 255
BSNT_04463___ 253 TTTAAGGCGAAACAAGAAAAA--GGCGTAT-ACC----GATTGGAAACGA 295
...|||||.||..|.|||||| ||||||| ||| ||.||.|
RBAM_027670__ 256 AGCAAGGCCAAGGAGGAAAAAGGGGCGTATCACCTGCGGACTGAA----- 300
BSNT_04463___ 296 CGTTTAAGGAAGATGGTGTATACACTGTCCAATCTCATGTCACAGCAAAA 345
|||.|.|||||.|||||.||.||.||.|||||.||.||.||.||||||
RBAM_027670__ 301 --TTTGATGAAGAGGGTGTGTATACCGTTCAATCCCACGTAACGGCAAAA 348
BSNT_04463___ 346 AAACAGCATAGCATGCCGACCTTAAAAGTCCAAGTCGGAGACGCCGATGC 395
.|.|||||||..||||||||..|||||||.|..||||||||.||.||.||
RBAM_027670__ 349 CAGCAGCATAATATGCCGACTGTAAAAGTGCGTGTCGGAGATGCTGAAGC 398
BSNT_04463___ 396 TGCC-AGCAATCAGTCAG---AAGAGGAGCATTCACATCATCATTGA 438
|||| |..|.|| .||.| |.|||||.||..|.||||||||||.|
RBAM_027670__ 399 TGCCGATGATTC-CTCCGGCCATGAGGAACAGACGCATCATCATTAA 444
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