Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04469 and RBAM_027720
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:58
# Commandline: needle
# -asequence dna-align/BSNT_04469___ythA.1.9828.seq
# -bsequence dna-align/RBAM_027720___ythA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04469___ythA-RBAM_027720___ythA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04469___ythA-RBAM_027720___ythA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04469___ythA
# 2: RBAM_027720___ythA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1343
# Identity: 1051/1343 (78.3%)
# Similarity: 1051/1343 (78.3%)
# Gaps: 16/1343 ( 1.2%)
# Score: 4070.0
#
#
#=======================================
BSNT_04469___ 1 ------GTGGATGATTTAGTTTTGGCCAGAAGCCTTTTTGGCACGACGAT 44
||||||||||||||.||.||||||||.||.||.||.||.||.||
RBAM_027720__ 1 ATGATCGTGGATGATTTAGTATTAGCCAGAAGTCTGTTCGGTACAACCAT 50
BSNT_04469___ 45 GGGCTTTCATATCATTTTCGCAACGCTTGGAGTCGGTCTCCCGCTCATGA 94
||||||||||||.|||||.||.||||||||.|||||..|.||.||.||||
RBAM_027720__ 51 GGGCTTTCATATTATTTTTGCGACGCTTGGTGTCGGCTTGCCTCTGATGA 100
BSNT_04469___ 95 TTTTAGTGGCGGAATTGATCTATCAAAAAACGAAAGATGACCATTATGCG 144
|||||.||||.||||||||.|||||||||||.||||||...||||||||.
RBAM_027720__ 101 TTTTAATGGCTGAATTGATTTATCAAAAAACAAAAGATCCGCATTATGCC 150
BSNT_04469___ 145 ATCATGGCGAAAAGATGGACGAAAGCACAAGCCGTTTTGCTGGGGGTCGC 194
||.|||||||||||.||||||||.||.||.||.|||.||||.||.||.||
RBAM_027720__ 151 ATTATGGCGAAAAGGTGGACGAAGGCGCAGGCTGTTCTGCTCGGCGTGGC 200
BSNT_04469___ 195 CATTCCGACCGGAACGATCGCGGGCACTCAGCTCGCGCTTTTATGGCCGG 244
.||.||||||||||||||||||||.||.|||||.||.|||||.|||||.|
RBAM_027720__ 201 GATACCGACCGGAACGATCGCGGGTACACAGCTTGCCCTTTTGTGGCCCG 250
BSNT_04469___ 245 GATTTATGGAAGTCATCGGCCGGGTGATGTCCCTGCCATTTCAAATTGAA 294
||||.|||||.|||||||||.||||||||||.||.||.|||||.||||||
RBAM_027720__ 251 GATTCATGGAGGTCATCGGCAGGGTGATGTCACTCCCGTTTCAGATTGAA 300
BSNT_04469___ 295 ATCTATGCTTTTTTTGTTGAAGCCCTTTTCATGTCGATTTATGTATACGC 344
||.|||||.||.|||.|.|||||.||.||.|||||.||||||||.|||||
RBAM_027720__ 301 ATTTATGCATTCTTTATCGAAGCGCTGTTTATGTCCATTTATGTCTACGC 350
BSNT_04469___ 345 AGCAGACC-GCTTATCACCTGCAATGAGGATTGTTGCTGTTTTCTTTGTG 393
.||.|||| |||.| |.||.||.|||.|.||..||||.||..|.||.||.
RBAM_027720__ 351 CGCTGACCGGCTGA-CTCCGGCGATGCGCATCATTGCCGTAATTTTCGTT 399
BSNT_04469___ 394 TTAGTCGGGGCCGCAGCATCCGCTGTTCTGATCACGAATGTTCACGCTTT 443
||..||||.|||||.||||||||.||..|.|||||.|||||||||||.||
RBAM_027720__ 400 TTGATCGGCGCCGCGGCATCCGCCGTCTTAATCACAAATGTTCACGCATT 449
BSNT_04469___ 444 TGAAGGTACGCCCGCCGGTTTTAAAATTTTAAACGGAAAAATCACAGATG 493
||||||.|||||.|||||.|||||||||||||||||.||||||||.||.|
RBAM_027720__ 450 TGAAGGAACGCCGGCCGGCTTTAAAATTTTAAACGGCAAAATCACTGACG 499
BSNT_04469___ 494 TTGACCCGTGGGCCGCGTTTTTTAATCCTAGCTTTTTTATCACTGCCGGC 543
|.||.||||||||.||||||||||||||.||||||||.|.|||.||.|||
RBAM_027720__ 500 TCGAACCGTGGGCAGCGTTTTTTAATCCAAGCTTTTTCACCACCGCGGGC 549
BSNT_04469___ 544 CATGTCGTGCTGTCCGCGTTTATGACCGGTGCGTTTATCGTGGCTTCTGT 593
||||||||.|||.|.||.||.|||||||||||.||||||||.||.||.||
RBAM_027720__ 550 CATGTCGTACTGACGGCTTTCATGACCGGTGCATTTATCGTTGCGTCAGT 599
BSNT_04469___ 594 TGCGGCGTATAAAATGATCCGGACGAGGAAAAAGGAAAAGGTCTATCGCT 643
||||||.|||||||||.|..|.|||||.|||.||||..||||.||.||||
RBAM_027720__ 600 TGCGGCTTATAAAATGCTGAGAACGAGAAAACAGGAGCAGGTATACCGCT 649
BSNT_04469___ 644 TTCACCGGAAAGCCCTTTTGCTCGCACTGACGATCGGCGGTAT-TTTTTC 692
|||||||.|||||.||..|||||||..|.||||||||.||.|| ||.|.|
RBAM_027720__ 650 TTCACCGAAAAGCGCTGCTGCTCGCCTTAACGATCGGAGGGATATTCTCC 699
BSNT_04469___ 693 ATTGCTGACCGCTTTGAACGGACATGAATCTGCACAGATGCTGTACGAAT 742
|||..|| ||.||||.|||||.||.||.||.||.|||.|.||.|||||||
RBAM_027720__ 700 ATTATTG-CCTCTTTAAACGGTCACGAGTCAGCCCAGCTTCTTTACGAAT 748
BSNT_04469___ 743 ACCAGCCCGAAAAATTAGCCGGTGCGGAAGGCCTGTTTGAAACAAGATCC 792
|||||||.||.||..|.||.||.||.|||||.|||||||||||.|||||.
RBAM_027720__ 749 ACCAGCCTGAGAAGCTTGCGGGCGCAGAAGGGCTGTTTGAAACTAGATCA 798
BSNT_04469___ 793 CATGCCCCGCTCGCTATCGGCGGTTTTACCGACCCGAATGAAGAAAAAGT 842
||.||.|||||.||.|||||.||||||||.||..|.||.|||||||||||
RBAM_027720__ 799 CACGCTCCGCTTGCGATCGGAGGTTTTACTGATGCAAAAGAAGAAAAAGT 848
BSNT_04469___ 843 AAAATGGGCAATCGAGATTCCATGGGCTTTAAGCTTTTTGGCAGCGAACC 892
|||||||||.||.||..|.||.||||||||||||||||||||.||.|||.
RBAM_027720__ 849 AAAATGGGCGATAGAAGTGCCGTGGGCTTTAAGCTTTTTGGCTGCAAACA 898
BSNT_04469___ 893 GTTTTGACACTGTTGTAAAAGGATTAAATGCATTTCCGAGAGATGAATGG 942
|.|||||.||.||.||.||||||||.||.||.|||||.|.|||.||.|||
RBAM_027720__ 899 GCTTTGATACCGTCGTCAAAGGATTGAACGCGTTTCCCAAAGACGAGTGG 948
BSNT_04469___ 943 CCGCCGCTTTTCATTCACACGCTGTTTAATGCGATGGTCGGTGTAGGCAT 992
|||||..|.|||||.||.||.||||||||.|..||||||||..|.||.||
RBAM_027720__ 949 CCGCCTTTATTCATCCATACACTGTTTAACGGAATGGTCGGCATCGGGAT 998
BSNT_04469___ 993 GCTGCTTATTCTTTATTCCATTATCGGTGTCGTCTGGAGAAAGGTGCTCA 1042
||||||.|||.|.||.||.||.|||||..||.|.||||||||..|..|.|
RBAM_027720__ 999 GCTGCTCATTTTGTACTCAATCATCGGCATCTTGTGGAGAAAAATTTTAA 1048
BSNT_04469___ 1043 AGAAAGACCGTTTCCCAACGTGGCTTTTG--GTCATTTTCATGACAGCAG 1090
||||||||.|.||.||.||.||||||||| .|.||||| |.||.||||
RBAM_027720__ 1049 AGAAAGACAGCTTTCCGACTTGGCTTTTGATTTTATTTT--TAACCGCAG 1096
BSNT_04469___ 1091 GCCCTTTTAGTCTCATCGGCATTGAATTCGGCTGGATTTTCGCATGTACG 1140
|.||..|.|||||.|||||.|||||||||||.|||||.|||||.||||||
RBAM_027720__ 1097 GGCCGCTCAGTCTGATCGGAATTGAATTCGGGTGGATATTCGCTTGTACG 1146
BSNT_04469___ 1141 GGGAGACAGCCTTGGGTCATCTATCATCTGCTGAAAACGTCAGATGTCGT 1190
|||.|.|||||.|||||.||.||.|||||.|||||||||||.||||||||
RBAM_027720__ 1147 GGGCGGCAGCCATGGGTGATTTACCATCTCCTGAAAACGTCTGATGTCGT 1196
BSNT_04469___ 1191 AACAACGACTGGCTCGATTGGGCTGCTGTTCTTATTTTTCACATTTGTTT 1240
.||.||.||.||.||.||.||..||||||||.|..|.||.||..|.||||
RBAM_027720__ 1197 CACGACAACCGGTTCAATCGGTTTGCTGTTCATCCTGTTTACGGTCGTTT 1246
BSNT_04469___ 1241 ATGCCGTGTTAGGC-GCAGCTGTCGTCTACGTGCTGCTGTATTATTTCCG 1289
|.|||.| ||.||| ||.||.|||.|.||.||||||||.|||||||||||
RBAM_027720__ 1247 ACGCCAT-TTTGGCAGCCGCAGTCATTTATGTGCTGCTTTATTATTTCCG 1295
BSNT_04469___ 1290 CAAGCACCCGGTTGACGAAGATTTAAATACAGCGGAGTCGTAA 1332
|||.||.||.|||||.||.|||.||||..|.|||||.||.|||
RBAM_027720__ 1296 CAAACATCCCGTTGAGGAGGATGTAAAAGCGGCGGAATCCTAA 1338
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