Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04483 and RBAM_027790

See Amino acid alignment / Visit BSNT_04483 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:59
# Commandline: needle
#    -asequence dna-align/BSNT_04483___ytxM.1.9828.seq
#    -bsequence dna-align/RBAM_027790___ytxM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04483___ytxM-RBAM_027790___ytxM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04483___ytxM-RBAM_027790___ytxM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04483___ytxM
# 2: RBAM_027790___ytxM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 869
# Identity:     592/869 (68.1%)
# Similarity:   592/869 (68.1%)
# Gaps:          88/869 (10.1%)
# Score: 1894.0
# 
#
#=======================================

BSNT_04483___      1 ATGGGAACTGTAAAC----ATAACGGTATCAGATGGTATCCGATATGC--     44
                     ||||.|||||| |||    |.|||||   |.|||||    || |||||  
RBAM_027790__      1 ATGGAAACTGT-AACAGTTAAAACGG---CCGATGG----CG-TATGCTA     41

BSNT_04483___     45 -AGTG--GCAGACGAG-GGAC-CGAATGCTTCCGAAGCCGTCGTCTGTCT     89
                      .|||  ||.|| .|| |||| ||||| |.||.|||||..|.||.|||||
RBAM_027790__     42 TCGTGCTGCTGA-TAGCGGACACGAAT-CATCTGAAGCTATTGTTTGTCT     89

BSNT_04483___     90 GCACGGGTTTACCGGCAGCAAACAATCATGGACTTTTCTTGATGAGATGC    139
                     |||.||.|||||.|||||||||.|||||||||..|||.|       |.||
RBAM_027790__     90 GCATGGATTTACGGGCAGCAAAGAATCATGGATGTTTTT-------ACGC    132

BSNT_04483___    140 TGTCTGATTC-------ACGTTTGATCAAAATTGATTGTTTAGGGCATGG    182
                     .|..||.|||       |||..||.|.|..|||||.||..|.||.||.||
RBAM_027790__    133 GGCATGTTTCCCGGCGAACGAATGGTGATGATTGACTGCCTTGGTCACGG    182

BSNT_04483___    183 GGAAACCGATGCCCCGCTGAATGGGAAAAGATACAGCACAAGCCGGCAAG    232
                     |||.||.||.||.||..||.|.|.|..|||.||||||.|.||||||||.|
RBAM_027790__    183 GGAGACAGACGCGCCTGTGCAAGCGGCAAGGTACAGCGCGAGCCGGCAGG    232

BSNT_04483___    233 TTTCTGACCTTGCCG-AGATTTTGAATCAATTAAAACTTCACAAAGTGAA    281
                     ||.|.|||||||||| .|.||||| |||||||||||||||||||||||||
RBAM_027790__    233 TTGCGGACCTTGCCGCCGTTTTTG-ATCAATTAAAACTTCACAAAGTGAA    281

BSNT_04483___    282 ATTGATTGGGTATTCTATGGGAGGAAGGCTTGCTTACTCTTTTGCGATGA    331
                     |.|.|||||.|||||||||||.|||||.|||||.||.||.|||||...|.
RBAM_027790__    282 ACTTATTGGTTATTCTATGGGGGGAAGACTTGCGTATTCCTTTGCACAGG    331

BSNT_04483___    332 CATATCCCGAGCGGGTATCGGCACTTGTGCTTGAAAGCACGACGCCGGGG    381
                     |||.|||..|.|||||.||.||.|||||..|.|||||.||.||.|||||.
RBAM_027790__    332 CATTTCCGCATCGGGTGTCAGCGCTTGTTTTGGAAAGTACAACCCCGGGC    381

BSNT_04483___    382 CTCAAAACACTTGGGGAACG------GCGGGAACGAATTATGCGGGACCG    425
                     ||||..||.|||..||||||      ||||      |||..|...|||||
RBAM_027790__    382 CTCAGCACGCTTCAGGAACGCAAAAAGCGG------ATTCAGTCAGACCG    425

BSNT_04483___    426 GAAGCTTGCTGATTTTATTTTAAGAGACGGGCTCAAAGCGTTTGTTGCGT    475
                     ||||||||||||.|||||.||..|.||.||..|.|.|.|||||||.|..|
RBAM_027790__    426 GAAGCTTGCTGACTTTATATTGCGGGAAGGTATAACATCGTTTGTCGATT    475

BSNT_04483___    476 ATTGGGAGAATATCCCTTTGTTTTCATCTCAGCAGAGGCTGGCTGAAGAT    525
                     ||||||||...||.||.||||||.|..|.||||.....|||.|.||    
RBAM_027790__    476 ATTGGGAGGGCATTCCGTTGTTTGCCACGCAGCTTTCTCTGCCGGA----    521

BSNT_04483___    526 ATTCGGC--ACAGGATACGAT-CGGGCCGTC-TGCGGAACAATAA---GA    568
                        |.||  |.|||...|.|| ||.||||.| .||.|||.|||||   |.
RBAM_027790__    522 ---CAGCGTAAAGGCGTCCATCCGTGCCGGCAGGCTGAAAAATAATCCGT    568

BSNT_04483___    569 TCGGGCTTGCGAACAGTTTAACCGGCATGGGCACCGGTTCACAGCCTTCC    618
                     .|||.|||||...|||..|...|||.|||||.||.||.||||||||.|||
RBAM_027790__    569 CCGGACTTGCAGGCAGCCTGCTCGGAATGGGGACGGGCTCACAGCCATCC    618

BSNT_04483___    619 TTCTGGAGCCGTGTAGAGGAA---------ATAGATGTTCCTGTGCTTCT    659
                     |..|||         ||||.|         ||..|.|..||.||.||.||
RBAM_027790__    619 TGGTGG---------GAGGCATTACACCGCATCAAAGCGCCCGTCCTGCT    659

BSNT_04483___    660 GATCTGCGGGGAGTGGGACGAAAAATTTTGCGCCATCAATCAAGAGGTGC    709
                     .||.|||||.||.|||||.|||||.||||||||.||.||||||.||||||
RBAM_027790__    660 CATATGCGGTGAATGGGATGAAAAGTTTTGCGCTATTAATCAAAAGGTGC    709

BSNT_04483___    710 ATAAGATGCTTCCTTCTAGTAGAATAGAGATTGTTCCAA--AAGCAGGAC    757
                     ||||..||||.||.||.||||.|||||||.||||  |||  |.||.||.|
RBAM_027790__    710 ATAACCTGCTCCCATCAAGTAAAATAGAGGTTGT--CAAACAGGCGGGGC    757

BSNT_04483___    758 ATACGGTCCATGTGGAACAGCCGCGATTGTTTGGTAAAATAGTGAGTGAG    807
                     |.|||||.||||||||||||||||||.|.||||||||.|||||.||||||
RBAM_027790__    758 ACACGGTACATGTGGAACAGCCGCGAATTTTTGGTAAGATAGTAAGTGAG    807

BSNT_04483___    808 TTTTTGACA-AGCATCTGA    825
                     ||||| |.| .||.|.|.|
RBAM_027790__    808 TTTTT-ATACGGCTTGTAA    825


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04483 and RBAM_027790

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
