Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04485 and RBAM_027800
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:59
# Commandline: needle
# -asequence dna-align/BSNT_04485___menD.1.9828.seq
# -bsequence dna-align/RBAM_027800___menD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04485___menD-RBAM_027800___menD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04485___menD-RBAM_027800___menD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04485___menD
# 2: RBAM_027800___menD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1774
# Identity: 1325/1774 (74.7%)
# Similarity: 1325/1774 (74.7%)
# Gaps: 71/1774 ( 4.0%)
# Score: 4821.0
#
#
#=======================================
BSNT_04485___ 1 TTGACAGTCAACCCGATTACTCATTACATCGGAAGTTTTATTGATGAATT 50
|||||| |||||||||||.|||||.||||||||.||||||||||||||
RBAM_027800__ 1 TTGACA---AACCCGATTACACATTATATCGGAAGCTTTATTGATGAATT 47
BSNT_04485___ 51 CGCCCTTTCCGGAATTACGGACGCCGTCGTTTGTCCGGGCTCAAGATCTA 100
|||.||.||.||..|.||.|||||.||.|||||.|||||.||.||.||.|
RBAM_027800__ 48 CGCTCTATCGGGTGTCACCGACGCAGTTGTTTGCCCGGGGTCGAGGTCAA 97
BSNT_04485___ 101 CACCGCTGGCTGTTCTTTGTGCTGCG---CATCCCGATA-TCAGCGTCCA 146
|.||..||||.|| |||| ||.||| ||.||.|||| ||| .|||||
RBAM_027800__ 98 CTCCCTTGGCGGT--TTTG-GCGGCGGCCCACCCGGATATTCA-AGTCCA 143
BSNT_04485___ 147 TGTCCAAATTGATGAAAGATCTGCCGGGTTTTTTGCCTTAGGTTTGGCAA 196
|.|.||.|||||||||.||||.||.||.|||||.||..|.|||.|.||||
RBAM_027800__ 144 TATACAGATTGATGAACGATCCGCAGGTTTTTTCGCACTCGGTCTTGCAA 193
BSNT_04485___ 197 AAGCGAAGCAGCGTCCCGTACTATTGATCTGTACATCTGGAACAGCCGCG 246
||||....||||||||.||..|..||||.|||||.||.|||||.||.|||
RBAM_027800__ 194 AAGCCCGCCAGCGTCCGGTCATGCTGATTTGTACGTCAGGAACGGCGGCG 243
BSNT_04485___ 247 GCTAACTTTTATCCGGCTGTGGTTGAAGCCCATTATTCAAGGGTGCCTAT 296
||||||||.||||||||.|||.|||||||.|||||||||||.||||||.|
RBAM_027800__ 244 GCTAACTTCTATCCGGCCGTGATTGAAGCTCATTATTCAAGAGTGCCTCT 293
BSNT_04485___ 297 TATTGTGTTAACTGCTGATCGGCCTCATGAGCTGCGCGAAGTAGGCGCAC 346
||||||..|.||||||||.|||||||||||..||.|.|||||.||.||.|
RBAM_027800__ 294 TATTGTCCTGACTGCTGACCGGCCTCATGAATTGAGGGAAGTGGGGGCGC 343
BSNT_04485___ 347 CGCAGGCTATTAATCAGCACTTCTTATTCGGTAACTTTGTTAAGTTTTTC 396
|.|||||.|||||.|||||.||..|.||||||||||||||||||||||||
RBAM_027800__ 344 CTCAGGCGATTAACCAGCATTTTCTGTTCGGTAACTTTGTTAAGTTTTTC 393
BSNT_04485___ 397 ACAGACTCTGCTCTTCCTGAAGAGTCTCCGCAAATGCTGAGATACATCCG 446
||||||||.|||||.|||||.||...|||.|||||||||||.||.|||.|
RBAM_027800__ 394 ACAGACTCGGCTCTGCCTGAGGAAAATCCTCAAATGCTGAGCTATATCAG 443
BSNT_04485___ 447 AACGCTGGCAAGCCGCGCTGCCGGAGAAGCACAAAAGCGCCCAATGGGGC 496
|||..||||..||.|.||.|...|.|||||....||||||||.|||||||
RBAM_027800__ 444 AACATTGGCCGGCAGAGCCGTAAGTGAAGCCGGGAAGCGCCCGATGGGGC 493
BSNT_04485___ 497 CTGTCCATGTGAATGTGCCGCTGCGCGAACCGCTGATGCCGGATCTTTCA 546
|.||||||.|.|||||||||||..|.||.||..|||||||||||.|.|||
RBAM_027800__ 494 CAGTCCATATCAATGTGCCGCTCAGAGAGCCTTTGATGCCGGATTTATCA 543
BSNT_04485___ 547 GATGAGCCGTTTGGAAGAATGAGAACAGGCCGTCATGTATCTGTGAAAAC 596
|..|..||.||||.|||||||||||..||.||.||.||.||.||.|.|||
RBAM_027800__ 544 GCCGCACCTTTTGAAAGAATGAGAAAGGGGCGGCACGTCTCAGTCACAAC 593
BSNT_04485___ 597 GGGTACGCAGTCTGTTGACCGCGAGTCCCTGTCTGATGTGGCTGAGATGC 646
.||.|..|||||.|.|||.|..||.||.||.|.|.||.|..|.|||...|
RBAM_027800__ 594 AGGGATTCAGTCAGCTGATCAAGATTCTCTCTGTCATATTACAGAGCGTC 643
BSNT_04485___ 647 TCGCAGAGGCTGAAAAAGGAATGATCGTCTGCGGAGAGCTCCATAGTGAT 696
|.||.|.|.|.||||.|||.||||||||||||||.||..|.||..||||.
RBAM_027800__ 644 TTGCGGGGACCGAAAGAGGTATGATCGTCTGCGGCGAAATTCACGGTGAA 693
BSNT_04485___ 697 GTGGATAAGGAAAACATTATTACGC-TGTCAAAAGCGCTTCAGTATCCAA 745
|..||.|||.|..|.||.||..||| ||.|.|.| .||||||||..||.|
RBAM_027800__ 694 GCAGAAAAGCAGCAAATCATCGCGCTTGCCGAGA-TGCTTCAGTTCCCGA 742
BSNT_04485___ 746 TTTTAGCGGATCCGCTGTCTAATCTGCGGAATGGTGTTCATGATAAAAGC 795
||||.||.||||||||.||.|||||.||.||.||....||||||||.| |
RBAM_027800__ 743 TTTTGGCTGATCCGCTTTCAAATCTCCGAAACGGGAAGCATGATAAGA-C 791
BSNT_04485___ 796 ACTG-TTATTGATGCGTATGATTCGTTTTTAAAAGATGATAAGC------ 838
.||| ||||||||||.|||||.|||||||||||||||| ||||
RBAM_027800__ 792 GCTGATTATTGATGCTTATGACTCGTTTTTAAAAGATG--AAGCAATAAA 839
BSNT_04485___ 839 TGAAGCGGAAACTTCGTCCTGATGTTGTCATTCGGTTTGGACCGATGCCT 888
.||.||| ||.||.|||||||.|||.||.||.||.||.||||||||.
RBAM_027800__ 840 AGAGGCG----CTGCGCCCTGATGCTGTGATCCGCTTCGGCCCGATGCCG 885
BSNT_04485___ 889 GTTTCAAAACCGGTTTTCTTATGGCTTAAGGATGATCCGGCGATTCAGCA 938
|||||.||||||.|.||.||||||||.|..||||||||.||.|||.||||
RBAM_027800__ 886 GTTTCCAAACCGCTCTTTTTATGGCTCAGAGATGATCCTGCCATTGAGCA 935
BSNT_04485___ 939 ---AATCGT-GATTGACGAGGATGGAGGCTGGAGAGATCCGACGCAGGTA 984
.||||| ||| ||.||.|||||.|||||||||||.||.||||..
RBAM_027800__ 936 GTTTATCGTCGAT----GAAGACGGAGGATGGAGAGATCCCACCCAGGCC 981
BSNT_04485___ 985 AGCGCGCATATGATTCATTGTAATGCGTC--TGTTTTTGCTGAGGAGATC 1032
.|||||||||||||||||||..||.|||| |||||||| ||
RBAM_027800__ 982 GGCGCGCATATGATTCATTGCCATCCGTCTGTGTTTTTG-------GA-- 1022
BSNT_04485___ 1033 ATGGCAGGCCTTACTGCTG---CCAGA------TCCTCAGAGTGGCTGGA 1073
.||.|.||.|.|.|||| ||.|| .|.||.|..|||||.||
RBAM_027800__ 1023 --AGCGGTCCGTTCAGCTGAAACCGGAAAACGGCCGTCCGGATGGCTTGA 1070
BSNT_04485___ 1074 AAAGTGGCAGTTTGTCAATGGGCGGTTCCGCGAG-CATCTGCAAACAATC 1122
.||.||||||||||||||||.||||||||| ||| |||.| |||..|
RBAM_027800__ 1071 GAAATGGCAGTTTGTCAATGAGCGGTTCCG-GAGTCATTT----ACAGGC 1115
BSNT_04485___ 1123 ----AGCAGTGAAGATGTTTCGTTTGAAGGCAATCTCTATCGAATC--CT 1166
||||..||.|||.|.||.||||||||.|||.|.||||| || ||
RBAM_027800__ 1116 CGCGAGCATGGATGATTTATCATTTGAAGGAAATGTATATCG--TCAGCT 1163
BSNT_04485___ 1167 TCAGCATCTTGTGCCTGAAAACAGCTCGCTGTTTGTGGGAAACAGCATGC 1216
||||||.|||||.||||||..|||.|||.|.|||||.||.||||||||||
RBAM_027800__ 1164 TCAGCACCTTGTCCCTGAAGGCAGTTCGATTTTTGTCGGCAACAGCATGC 1213
BSNT_04485___ 1217 CGATCAGGGATGTTGATACGTTTTTTGAAAAGCAGGACCGCCCTTTCCGG 1266
||||..|.||.||.||||||||.||||||||.||.||.||..|.|||||.
RBAM_027800__ 1214 CGATTCGCGACGTGGATACGTTCTTTGAAAAACAAGATCGTTCCTTCCGT 1263
BSNT_04485___ 1267 ATTTATTCAAACCGGGGAGCAAACGGGATAGACGGTGTCGTCTCCTCTGC 1316
.|||||.|.|||||.||.||.|||||.||.|||||.||.||||||||.||
RBAM_027800__ 1264 GTTTATGCCAACCGCGGCGCTAACGGAATTGACGGAGTTGTCTCCTCGGC 1313
BSNT_04485___ 1317 CATGGGGGTATGTGAAGGAACAAAAGCGCCTGTTACCCTTGTGATTGGAG 1366
.|||||..|.||||||||.||||||||.|||||.||.|||||.|||||||
RBAM_027800__ 1314 TATGGGACTGTGTGAAGGTACAAAAGCTCCTGTCACGCTTGTCATTGGAG 1363
BSNT_04485___ 1367 ATTTATCTTTTTATCACGATTTAAACGGCCTGCTGGCGGCCAAAAAGCTG 1416
|||||||.|||||.||.|||||||||||.|||.|.|||||.|||||.||.
RBAM_027800__ 1364 ATTTATCGTTTTACCATGATTTAAACGGGCTGTTAGCGGCTAAAAAACTT 1413
BSNT_04485___ 1417 GGTATTCCTCTTACTGTGATTCTTGTCAATAATGACGGAGGAGGGATTTT 1466
||.|||||.|||||.||.|||.|..|.||.|||||.||.||.||||||||
RBAM_027800__ 1414 GGAATTCCGCTTACGGTTATTTTAATAAACAATGATGGCGGCGGGATTTT 1463
BSNT_04485___ 1467 CTCCTTTTTGCCGCAGGCTTCTGAAAAGACACACTTTGAAGATTTGTTCG 1516
|||.||||||||||||||.|||||.|||||.||.||||||||..||||||
RBAM_027800__ 1464 CTCGTTTTTGCCGCAGGCATCTGATAAGACTCATTTTGAAGAACTGTTCG 1513
BSNT_04485___ 1517 GCACACCGACAGGGCTCGATTTCAAGCATGCCGCTGCACTTTACGGCGGA 1566
|.||.|||||.||.||.||||||..|||||||||.|||||.||||||||.
RBAM_027800__ 1514 GTACGCCGACGGGTCTTGATTTCCGGCATGCCGCCGCACTGTACGGCGGG 1563
BSNT_04485___ 1567 ACGTATTCATGCCCGGCTTCTTGGGATGAATTCAAAACAGCTTACGCGCC 1616
||||||.|.|||||.|...|.|||||.|.|||.||....||.||...|||
RBAM_027800__ 1564 ACGTATACTTGCCCTGAGACATGGGAGGCATTTAAGGATGCGTATCAGCC 1613
BSNT_04485___ 1617 GCAGGCAGACAAGCCCGGACTCCATTTGATTGAAATCAAAACGGATCGCC 1666
||||||.||||||||||||||.|||.|.||.||..|.|||||.|||||..
RBAM_027800__ 1614 GCAGGCGGACAAGCCCGGACTTCATATAATCGAGCTGAAAACAGATCGGA 1663
BSNT_04485___ 1667 AATCAAGAGTCCAGCTTCATCGCGATATGCTGAATGAGGCTGTGCGGGAA 1716
.|||||||||.||..|.|||||||||.|||||.|.|..||.|||||||||
RBAM_027800__ 1664 CATCAAGAGTTCAATTCCATCGCGATCTGCTGCAGGCCGCAGTGCGGGAA 1713
BSNT_04485___ 1717 GTGAAAAAACAATGGGAACTGTAA 1740
|||||||||.|||||.||||||||
RBAM_027800__ 1714 GTGAAAAAAGAATGGAAACTGTAA 1737
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