Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04583 and RBAM_028270

See Amino acid alignment / Visit BSNT_04583 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:02
# Commandline: needle
#    -asequence dna-align/BSNT_04583___yulF.1.9828.seq
#    -bsequence dna-align/RBAM_028270___yulF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04583___yulF-RBAM_028270___yulF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04583___yulF-RBAM_028270___yulF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04583___yulF
# 2: RBAM_028270___yulF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 996
# Identity:     733/996 (73.6%)
# Similarity:   733/996 (73.6%)
# Gaps:          18/996 ( 1.8%)
# Score: 2562.0
# 
#
#=======================================

BSNT_04583___      1 GTGATACGTTTTGCAATAATAGGAACCAACTGGATTACAGACCGCTTTCT     50
                     .||||.||.|||||||.|.|.|||||.||.|||||||||||.||.|||||
RBAM_028270__      1 ATGATTCGATTTGCAACAGTCGGAACGAATTGGATTACAGAACGATTTCT     50

BSNT_04583___     51 TGAGTCAGCAGCGGATATCGAAGATTTTCAGCTGACTGCTGTTTATTCAA    100
                     .|||.|.||..|.|.|||.||.||||||||..|.||.||.||||||||.|
RBAM_028270__     51 GGAGGCGGCTTCTGCTATTGATGATTTTCAATTAACGGCGGTTTATTCCA    100

BSNT_04583___    101 GATCGGCTGAACGCGCTGGC-GAGTTTGCTGCTAAACACAACGCTGCGCA    149
                     ||.|.|..|||||||| ||| ||.||.||.|..||||||..||||||.||
RBAM_028270__    101 GAACTGAGGAACGCGC-GGCGGAATTCGCCGGCAAACACGGCGCTGCTCA    149

BSNT_04583___    150 TGCCTTC-TCAGACCTTCAGGAAATGGCGGCGAGCGATTGCTTTGATGCC    198
                     |...||| .||| |||..|.||||||||||..|||.|...||.|||.||.
RBAM_028270__    150 TTATTTCACCAG-CCTGAAAGAAATGGCGGAAAGCAAAGCCTATGACGCG    198

BSNT_04583___    199 GTATACATAGCGAGCCCGAACGCTCTTCACAAGGAACAAGCCGTTCTCTT    248
                     ||.||..|.||.||||||||.||..|||||||.||.||.||.||.||.||
RBAM_028270__    199 GTGTATCTCGCCAGCCCGAATGCATTTCACAAAGAGCAGGCGGTCCTTTT    248

BSNT_04583___    249 TATGAACCATGGCAAGCATGTGCTTTGTGAGAAGCCGTTTGCTTCGAATA    298
                     ||||.|.||.|||||||||||.||.||.||.||.||||||||.||.||..
RBAM_028270__    249 TATGGAACACGGCAAGCATGTACTGTGCGAAAAACCGTTTGCGTCTAACG    298

BSNT_04583___    299 CAAAAGAAACAGAAGAGATGATCTCA-GCGGCTAAGGCAAACGGCGTTGT    347
                     |||..|||||.||.||.||||| ||| ||.||.||..|.|||||||||.|
RBAM_028270__    299 CAAGGGAAACGGATGAAATGAT-TCACGCAGCCAAAACGAACGGCGTTCT    347

BSNT_04583___    348 TCTCATGGAAGCAATGAAGACCACTTTCCTGCCGAATTTCAAAGAGCTGA    397
                     ..|.||||||||.|||||.||.||.|||||||||||.||||....|||..
RBAM_028270__    348 CTTGATGGAAGCCATGAAAACAACGTTCCTGCCGAACTTCAGCATGCTTC    397

BSNT_04583___    398 AAAAACACCTGCATAAAATCGGCACTGTCCGCAGATTTACCGCAAGCTAC    447
                     ||||.|||.|.|||||||||||..|.|||.|.|||||.||.|||||||||
RBAM_028270__    398 AAAACCACTTACATAAAATCGGACCCGTCAGGAGATTCACGGCAAGCTAC    447

BSNT_04583___    448 TGCCAGTATTCCTCACGATATGACGCGTTCAGAAGCGGAACTGTTTTGAA    497
                     |||||.|||||.|||||||||||.||.|..|.||.|||.||.||..|.||
RBAM_028270__    448 TGCCAATATTCATCACGATATGATGCATATAAAAACGGTACGGTGCTAAA    497

BSNT_04583___    498 TGCGTTTCAGCCTGAGCTTTCCAATGGGTCATTAATGGATATTGGCGTCT    547
                     .||||||.|.|||||..|.||.||.||.||.||||||||.||.|||||.|
RBAM_028270__    498 CGCGTTTAATCCTGAATTATCGAACGGTTCGTTAATGGACATCGGCGTGT    547

BSNT_04583___    548 ATTGTATTTATCCGGCTGTTGTGTTGTTTGGCGCGCCGAAGGATGTAAAA    597
                     |.||.|||||||||||.||.||..||||.|||...|||||..|.||.|..
RBAM_028270__    548 ACTGCATTTATCCGGCCGTCGTCCTGTTCGGCAAACCGAAAAACGTCATT    597

BSNT_04583___    598 GCAAACGG--ATATGCT-TTATCCTCCGGAGTGGACGGAGAAGGAACTGT    644
                     ||.|.|||  |||..|| .||   |||||.||.|||||.|||||.||.||
RBAM_028270__    598 GCGACCGGTCATAAACTAGTA---TCCGGCGTTGACGGCGAAGGCACGGT    644

BSNT_04583___    645 CATTCTGTCTTACGACGGGTTCGAAGCTGTTCTGATGCATTCCAAAATCT    694
                     |||||||||.||||||||.||.|||||.||.|||||||||||.|||||||
RBAM_028270__    645 CATTCTGTCATACGACGGATTTGAAGCGGTGCTGATGCATTCGAAAATCT    694

BSNT_04583___    695 CTACTTCCTATGCCCCGGCTGAAATCCAGGGTGAAGACGGGACGATTGTA    744
                     |.|.|||.|.|||||||||.|||||.||||||||||||||.|||||.||.
RBAM_028270__    695 CAAATTCGTTTGCCCCGGCGGAAATTCAGGGTGAAGACGGCACGATCGTT    744

BSNT_04583___    745 ATCGATACGATTCACCGGCCTGAACGTGTTGAAATCCGCTACCGGGACGG    794
                     .|.||.|..||||||.|.||.|||||.|..|||||||||||.||.|||||
RBAM_028270__    745 CTGGACAGCATTCACGGACCGGAACGGGCGGAAATCCGCTATCGTGACGG    794

BSNT_04583___    795 CCGCCTTGAAAACATCGCGATCCCTGATCCTAAACCAGCGATGTTCTATG    844
                     |||....|||.||||..|..|||||||||..|||||..||||||.|||.|
RBAM_028270__    795 CCGGACGGAAGACATTTCAGTCCCTGATCTGAAACCGTCGATGTACTACG    844

BSNT_04583___    845 AAGCAGAAGAATTTGTCACGCTCAT---AAAAGAGAATAAGCTGGAATCT    891
                     ||.|.|..|||||..|||..||..|   |||.| ||  .|||.|||.|||
RBAM_028270__    845 AAACGGCTGAATTCATCAATCTTCTTCGAAACG-GA--CAGCGGGAGTCT    891

BSNT_04583___    892 GAAGAAAATACATTTGAACGGTCTTTGACCACCGCAAAGATTATGGAAGA    941
                     ...|||||||||||||||||.|||||.|..||.||||..|||||||||||
RBAM_028270__    892 TCCGAAAATACATTTGAACGTTCTTTCATTACGGCAAGCATTATGGAAGA    941

BSNT_04583___    942 AGCAAGAAAGCAAATGGGGATTGTATACCCTGCTGATCAAGCTTAA    987
                     |||.|||||.|||||.||.|||||.|..||.||.||||||...|||
RBAM_028270__    942 AGCGAGAAAACAAATCGGAATTGTCTTTCCCGCCGATCAAAACTAA    987


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04583 and RBAM_028270

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
