Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04597 and RBAM_028310

See Amino acid alignment / Visit BSNT_04597 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:02
# Commandline: needle
#    -asequence dna-align/BSNT_04597.1.9828.seq
#    -bsequence dna-align/RBAM_028310___tlpA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04597-RBAM_028310___tlpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04597-RBAM_028310___tlpA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04597
# 2: RBAM_028310___tlpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2029
# Identity:    1115/2029 (55.0%)
# Similarity:  1115/2029 (55.0%)
# Gaps:         542/2029 (26.7%)
# Score: 3656.5
# 
#
#=======================================

BSNT_04597         0 --------------------------------------------------      0
                                                                       
RBAM_028310__      1 TTGAAAAAAACAGCAAAAAAAATCGCCAGAAAATCAATAGCCAAAAAACT     50

BSNT_04597         0 --------------------------------------------------      0
                                                                       
RBAM_028310__     51 GATCATTTCATTTTTACTGATCTTACTCATTCCGGTAGCAGTATTGGCTG    100

BSNT_04597         0 --------------------------------------------------      0
                                                                       
RBAM_028310__    101 CCGGCGCCTACCGTTCGGCGGCTTCATCCGTTGAAAAGCAAATGATGGAA    150

BSNT_04597         0 --------------------------------------------------      0
                                                                       
RBAM_028310__    151 AGCGCCGAAGGAAATGTGCAAATCTTAAACAATATGATTGATGACCGGAT    200

BSNT_04597         0 --------------------------------------------------      0
                                                                       
RBAM_028310__    201 CGGAATGTTTACAAAAAGCTCAGCATATTTCAGCGAATGGGCGACAAGCG    250

BSNT_04597         0 --------------------------------------------------      0
                                                                       
RBAM_028310__    251 CCAAATTTAAAGAAAAAAACCAAACGGAAATGCAAGAAAGGTTCAAGCAG    300

BSNT_04597         0 --------------------------------------------------      0
                                                                       
RBAM_028310__    301 TTTATTGAAAGCAATGATAAAGCGTCCGCCGTATTTTCAAGCAGCAAGGA    350

BSNT_04597         1 -------------------------------ATGCCAAGTGACTTTAA--     17
                                                    |||||....||.||.||  
RBAM_028310__    351 AGGAACGTTTACCCGTTATCCGCATGCCGATATGCCGGCCGATTTCAACC    400

BSNT_04597        18 TGCTTTGGAACGAGATTGGTACAAAGAAGCAATGGCCAATAAAGGCAAAA     67
                     .||||  |||.||...|||||..|.|||||.||||..|||||||||.|||
RBAM_028310__    401 CGCTT--GAAAGAAGCTGGTATCAGGAAGCCATGGAGAATAAAGGCCAAA    448

BSNT_04597        68 CAATTGTCACTGAGCCTTATGAATCGATTTCATCAGGAAAA--ATGGTCG    115
                     |.||..||||.||.||||||||.||.||.|||  |..||||  |||||||
RBAM_028310__    449 CCATCATCACAGACCCTTATGAGTCCATCTCA--AACAAAAAGATGGTCG    496

BSNT_04597       116 TCACCATCGCACGTCAAACGGTG---GATGGGTCAGGTGTTGTCGCCATT    162
                     |||||||.||.||   ..|||.|   ||.||.|||||.||.|||||||||
RBAM_028310__    497 TCACCATGGCCCG---CGCGGCGCAAGACGGATCAGGCGTCGTCGCCATT    543

BSNT_04597       163 GATATGAAAATTGATGA-CTTAGTCACTACCGCGAAAGGAATCAATATCG    211
                     |||||.|||||.||.|| ||.| ||||.|...|.||||.|.|.||.||||
RBAM_028310__    544 GATATAAAAATCGACGATCTCA-TCACGATGACAAAAGAAGTGAACATCG    592

BSNT_04597       212 GAAAAGAAGGCTATGCTTTTATTTTGAGCCAAAACAAGAAAGTCATCGCC    261
                     ||||||||||.||.||.|||||..|.|||.||||.||.||||.|.|.|||
RBAM_028310__    593 GAAAAGAAGGATACGCCTTTATCCTCAGCAAAAATAAAAAAGCCGTTGCC    642

BSNT_04597       262 TACTCCGGAGAAAAAGCGGGAACAGAGCTAAAAGGGGACTGGGTTGATAA    311
                     |||...|..||||||||.||..|.|.|.||...||..|.||||||||||.
RBAM_028310__    643 TACAGTGATGAAAAAGCCGGCGCGGCGGTATCGGGAAAATGGGTTGATAC    692

BSNT_04597       312 GCTCTACA--AGGATAAAAGCGGGGACTTTGAATATACGTACAAAGGCAA    359
                     ..|.|.||  .||..||||  ||..||||||||||||||...||.||.||
RBAM_028310__    693 ATTATTCAGCGGGCAAAAA--GGCAACTTTGAATATACGCTGAACGGAAA    740

BSNT_04597       360 AAAGAAAAAAATGGCATTTGCAACAAGCGAAACAACAGGCTGGAAAATCA    409
                     |..||||||||||||.|..|..||.|..|||.|.||.||||||||.||||
RBAM_028310__    741 AGCGAAAAAAATGGCGTACGTGACCAATGAAGCGACGGGCTGGAAGATCA    790

BSNT_04597       410 GCGGCACGATGT--ATGCAAACGAGATTCACGATGCTGCAAGCAGGGTTC    457
                     ||||.||.||||  .||.||  ||.||..|.|||||.|||||...|||||
RBAM_028310__    791 GCGGAACCATGTCCGTGGAA--GAAATCAAGGATGCGGCAAGACCGGTTC    838

BSNT_04597       458 TGA-TCATGGC--TTCAATCGTTCTGGCGATTGCCATCGCAGCTGGAATG    504
                     ||| || ||||  ||  |||.|..|||||||.|||||.||.||.||.|||
RBAM_028310__    839 TGACTC-TGGCCGTT--ATCATATTGGCGATAGCCATTGCCGCAGGGATG    885

BSNT_04597       505 A----CGGCGATTTATTTTGTGATTCGATCCATCACAAAGCCATTGAGAC    550
                     |    |    |||||||||||.||.||.||.||.||.||.||.||.|.||
RBAM_028310__    886 ATTTTC----ATTTATTTTGTCATCCGCTCAATTACCAAACCGTTAAAAC    931

BSNT_04597       551 GCATTGTCGCATCCGCTGAAAAAATTAGTGAAGGCGATCTAACCGAAACG    600
                     |..|.||.||.||.||.||||||||.||....||.|||||.||.|||||.
RBAM_028310__    932 GTCTCGTAGCTTCAGCGGAAAAAATCAGCAGCGGAGATCTGACGGAAACC    981

BSNT_04597       601 ATTGAAATCAATTCAAAAGATGAACTCGGCGTTCTGAGCGAGAGCTTCAA    650
                     |||||..|||..||..|||||||.||.|||||.||..|..|.||.||.||
RBAM_028310__    982 ATTGATGTCAGCTCTCAAGATGAGCTGGGCGTGCTCGGTAAAAGTTTTAA   1031

BSNT_04597       651 TCATATGGCACACTCGCTTCGCTCGCTCATTCACGGGATCAAAGACTCAG    700
                     |||||||.||.|.||.||.||.|||||.|||||.||.||..|.|||||.|
RBAM_028310__   1032 TCATATGACAGATTCACTCCGTTCGCTTATTCAGGGAATTCAGGACTCTG   1081

BSNT_04597       701 TAGAACACGTTGCCTCATCGTCTGAAGAGCTGACTGCATCGGCAGACCAG    750
                     |.|||||.||.||.||.||.||.||.||||||||.||.|||||.||.|||
RBAM_028310__   1082 TTGAACATGTCGCTTCTTCCTCAGAGGAGCTGACGGCTTCGGCTGAGCAG   1131

BSNT_04597       751 ACAAGCAGAGCCACTGAGCACATTACGATGGCTATCGAGCAATTTTCAAA    800
                     ||.||||.|||.||.||.||.||.||..|.||.||.||.||.|||||.||
RBAM_028310__   1132 ACGAGCAAAGCAACGGAACATATCACCCTTGCGATTGAACAGTTTTCTAA   1181

BSNT_04597       801 CGGCAGTGAAAGCCAAAGCGAGAAAATAG---AAACGACAACCGAACAAA    847
                     .||.|..|||..||||||.||||..||.|   ||.|||||.||   |||.
RBAM_028310__   1182 TGGAACGGAAGACCAAAGTGAGAGTATTGATAAAGCGACAGCC---CAAG   1228

BSNT_04597       848 TTAATGAAATGAATGACGG-------------------------------    866
                     |.|||||.|||||.|||||                               
RBAM_028310__   1229 TGAATGAGATGAAAGACGGGCTCAGTGATCTGGCGGAAGCGGCAGCCGTG   1278

BSNT_04597       867 --------------------ATTGGCAGAG----CTGGCGC---------    883
                                         ||.|||.|||    |.|||||         
RBAM_028310__   1279 GTGACGGAAACGTCAATTGAATCGGCGGAGATATCCGGCGCCGGTGAGCG   1328

BSNT_04597       884 --------------------GCCAAATGAACACAATTGACCATTCTGTAA    913
                                         ||||.|||..|.|.||||||||.||.||||
RBAM_028310__   1329 GCTTGTCAAGAAAACAGCCGGCCAGATGGGCGCCATTGACCAATCCGTAA   1378

BSNT_04597       914 --AAGCAGCGGAACAAGTGGTGAAAGGGCTGGAGATCAAATCAAAGGATA    961
                       ||  ||||||.|||||.||..|||||||.||..|||||||..||||.|
RBAM_028310__   1379 GTAA--AGCGGAGCAAGTCGTACAAGGGCTTGAACTCAAATCGCAGGACA   1426

BSNT_04597       962 TCACGAATATTTTGCGTGTCATCAACGGCATTGCGGATCAAACCAATCTT   1011
                     ||||.|..||||||||.|||||.|||||||||||.||||||||.|||||.
RBAM_028310__   1427 TCACCAGCATTTTGCGCGTCATTAACGGCATTGCCGATCAAACGAATCTC   1476

BSNT_04597      1012 TTGGCTTTAAATGCCGCCATTGAAGCGGCCAGAGCGGGTGAATACGGACG   1061
                     .|.|||||||||||.||||||||||||||.||||||||.|||||||||||
RBAM_028310__   1477 CTTGCTTTAAATGCAGCCATTGAAGCGGCAAGAGCGGGAGAATACGGACG   1526

BSNT_04597      1062 GGGCTTCTCAGTCGTCGCTGAGGAAGTGAGAAAGCTCGCGGTACAGTCGG   1111
                     .||.||.||||||||.||.||.||||||||||||||.||.||.||.||.|
RBAM_028310__   1527 CGGTTTTTCAGTCGTTGCCGAAGAAGTGAGAAAGCTTGCCGTCCAATCCG   1576

BSNT_04597      1112 CTGACTCGGCAAAAGAAATTGAATCGCTGA--TCAGTGAAATAGTAAAAG   1159
                     |.||.||.||.||||||||.||||| ||.|  ||| ||||||.||.||||
RBAM_028310__   1577 CCGATTCAGCGAAAGAAATCGAATC-CTTAATTCA-TGAAATCGTCAAAG   1624

BSNT_04597      1160 AAATTCACACATCACT--GAACGTGCTTCAGTCCGTAAACAAAGAAGTTG   1207
                     |||||||.||.||.||  |||  ||||..|.|||||.||..|.||.||..
RBAM_028310__   1625 AAATTCATACTTCGCTCGGAA--TGCTGGAATCCGTCAATCACGAGGTGA   1672

BSNT_04597      1208 AAACAGGGCTTGTCA--TGACGGATGAAACTAAACAGAGCTTCAAACATA   1255
                     |||..||.||  |||  |.|||||.|||||..||.|.||||||....|.|
RBAM_028310__   1673 AAAGCGGACT--TCAGTTAACGGACGAAACGGAAAAAAGCTTCCGGGACA   1720

BSNT_04597      1256 TATCGC---AAATGACCAATCAAATTGCTTCCGAGCTGCAAAACATGAAT   1302
                     |.|| |   |||  ||.|||||.|||||....||.||||||||.||||||
RBAM_028310__   1721 TTTC-CGTTAAA--ACAAATCAGATTGCCGGTGAACTGCAAAATATGAAT   1767

BSNT_04597      1303 GCGACGGTTGAGGAGCTGTCAGCGGGAGCTCAAGAAATTTCCGCAGCTTC   1352
                     ||.||.||.||..|.||.||.||.||..||||.|||.|.||....|||||
RBAM_028310__   1768 GCAACCGTGGAACAACTTTCTGCCGGGTCTCAGGAAGTATCAAACGCTTC   1817

BSNT_04597      1353 AAATGATATCACAGCCATTTCTAAGGAAAGCTCGGATGGCATCCAAGATA   1402
                     |.|.||||||.|.|||.|.||.|...|||||.|||..|||||.||.||.|
RBAM_028310__   1818 AGAGGATATCGCGGCCGTCTCCAGACAAAGCGCGGCCGGCATTCAGGACA   1867

BSNT_04597      1403 TCGCCGCTTCAGCTGAGGAACAGCTGGCATCCATGGAGGAGATTAGTTCA   1452
                     ||||.|||||||||||.||.|||||.||.|||||||||||.||.|||||.
RBAM_028310__   1868 TCGCGGCTTCAGCTGAAGAGCAGCTTGCGTCCATGGAGGAAATCAGTTCC   1917

BSNT_04597      1453 TCTGCACTGACGCTTGAAAGAATGTCTGAAGAACTCCGTGATCTGACAAA   1502
                     ||.||..|.|||||.||||.||||.|.||||||.|.||.||.||||||||
RBAM_028310__   1918 TCCGCCGTCACGCTGGAAAAAATGGCGGAAGAATTACGCGAACTGACAAA   1967

BSNT_04597      1503 ACAATTTAAAGTGGATAGAC----AATAG   1527
                     .|..|||||    ||||.||    ||   
RBAM_028310__   1968 GCGTTTTAA----GATAAACTCTTAA---   1989


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