Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04599 and RBAM_028320

See Amino acid alignment / Visit BSNT_04599 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:03
# Commandline: needle
#    -asequence dna-align/BSNT_04599___mcpB.1.9828.seq
#    -bsequence dna-align/RBAM_028320___mcpB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04599___mcpB-RBAM_028320___mcpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04599___mcpB-RBAM_028320___mcpB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04599___mcpB
# 2: RBAM_028320___mcpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2038
# Identity:    1476/2038 (72.4%)
# Similarity:  1476/2038 (72.4%)
# Gaps:         101/2038 ( 5.0%)
# Score: 5048.5
# 
#
#=======================================

BSNT_04599___      1 ATGAAGACTTTTATCAATTGGCTTAAGAAA-CCGTCTATTTCAAAGAAAT     49
                     |||||.|..||.||||||||| |..|.||| .|.||.||||||...||||
RBAM_028320__      1 ATGAAAAAATTCATCAATTGG-TGCACAAAGGCATCGATTTCACGTAAAT     49

BSNT_04599___     50 TAATCGTCTCATTTATTGCGATTCTCATTATCCCTATTCTTATATTAGAA     99
                     |||||.|.||||||||.|.|||..|.||.||.||.|||||..|.||||||
RBAM_028320__     50 TAATCATTTCATTTATCGTGATCTTAATCATACCGATTCTCGTGTTAGAA     99

BSNT_04599___    100 TTTAGCTCTTACCGAAGCGCCAGCGGAAA---GCTGGATCAGGAAATTAT    146
                     ||.||.||.||||..|..||.|||   ||   |||||||.|..|.|||..
RBAM_028320__    100 TTCAGTTCATACCATACGGCGAGC---AATTCGCTGGATGATCAGATTTC    146

BSNT_04599___    147 GGGAAATGCGAAAAACAGTGTCGATACATTTAATACAACTGTTACAAATG    196
                     .||.||.||||||||.|...||||..|.|||||.|||||..|||||||||
RBAM_028320__    147 AGGCAACGCGAAAAATAACATCGAATCTTTTAACACAACCATTACAAATG    196

BSNT_04599___    197 ATCTGGGAGAAAAAGCGAAAGC-AGTCACCTTTTTCAGTGAATCTCTTAA    245
                     ||.|.||.|.||||||.||.|| |.|.| .||||||||||||.| .||||
RBAM_028320__    197 ATATCGGCGCAAAAGCAAAGGCGATTGA-ATTTTTCAGTGAAAC-GTTAA    244

BSNT_04599___    246 AA-GGTCCGCAT--TCAAAGGGAA----ATCCAATCAAGAAGAGATCAAA    288
                     || ||||..|.|  ||||||..||    |||...||.||||||    |||
RBAM_028320__    245 AAGGGTCATCCTTCTCAAAGAAAAACATATCTGCTCTAGAAGA----AAA    290

BSNT_04599___    289 GCTAAATTTTC--ACAATATGTATCTATTAATCAAGGA-GTAGCCAGAAT    335
                     |       |||  .|||||....||||||.|| ||||| ||||||.|.||
RBAM_028320__    291 G-------TTCGGGCAATACACGTCTATTCAT-AAGGACGTAGCCCGCAT    332

BSNT_04599___    336 TTATGGGGGCGCAGATAACGGCACTTACGTACAAGCGCCAAA--AGAAAA    383
                     |||.||.||..|.||..|||||...||||.|||.|||||.||  ||||.|
RBAM_028320__    333 TTACGGAGGAACGGAAGACGGCGGCTACGCACAGGCGCCGAAGGAGAATA    382

BSNT_04599___    384 ATTGCCGGACGGATACGACCCGAGACAACGCCCTTGGTACCAGGATGCGA    433
                     .|  ||||.||..|||||.||||||..||||.|||||||..|.||.||..
RBAM_028320__    383 CT--CCGGCCGATTACGATCCGAGAACACGCACTTGGTATAAAGACGCTG    430

BSNT_04599___    434 TGAAGGCCGGCGGTGAAATTGTCGTGACAGATCCTTACGTGGCTGCGAGT    483
                     |||||||||||||.....|.||.||.||.||.||||||...||.||.||.
RBAM_028320__    431 TGAAGGCCGGCGGCACGCTCGTTGTCACCGACCCTTACACCGCGGCAAGC    480

BSNT_04599___    484 GACGGAAGCATGGTCATTACCATTGCACAGGAGCTGAAGGACGGATCTGG    533
                     |||||.|||||||||.|.|||.|.|||.||.||.||.||||||||.|.||
RBAM_028320__    481 GACGGCAGCATGGTCGTCACCGTGGCAAAGCAGATGCAGGACGGAACAGG    530

BSNT_04599___    534 CGTTGTCGCCATGGATATTACCATTGATAAATTGTTAGAA-CAAATGAAA    582
                     |||.||.||||||||||||||.|||||..|..||.| ||| ||.|||.|.
RBAM_028320__    531 CGTAGTGGCCATGGATATTACGATTGACCAGCTGCT-GAAGCAGATGCAG    579

BSNT_04599___    583 CAAATCAAGGTCGGAAAAGAAGGTTATGCTTTCATTGCAACAAAAAACAA    632
                     ..||||||..||||..||.||||.|..|..||.||..|..|.|||||.||
RBAM_028320__    580 GGAATCAAAATCGGGCAAAAAGGATTCGTGTTTATCACGTCTAAAAATAA    629

BSNT_04599___    633 AACCTATGTCGCCCACAAGAACCATAAGGCTGGAGA-AAAGCTTTCA---    678
                     ||||||||||||.||.||..||||.||..|.||.|| |||| |||||   
RBAM_028320__    630 AACCTATGTCGCGCATAAAGACCACAAACCGGGCGATAAAG-TTTCAACC    678

BSNT_04599___    679 ----GGC-GACTG-GGTAGCCAAAATGTATGCGAATGACAGCGGTGAACT    722
                         ||| ||.|| ||||..||        || ||.||||||||      
RBAM_028320__    679 CCGTGGCTGAATGAGGTATACA--------GC-AAAGACAGCGG------    713

BSNT_04599___    723 CCAGTATACTCTTAATA-ACG----------AAGATAAAAAGATGACCTA    761
                      ||.|||    ||.||| |||          ||.|||||||.|||.|.|.
RBAM_028320__    714 -CATTAT----TTCATACACGCTCGATGATCAAAATAAAAAAATGGCGTT    758

BSNT_04599___    762 TACTACAAACGAACTGACTGGTTGGAAAATAGCCGGCACAATGTATATGG    811
                     |||.|||||..|||||||.||.||||||||||..||.|..|||.|..|..
RBAM_028320__    759 TACGACAAATAAACTGACCGGATGGAAAATAGAGGGGAGCATGGAGCTCA    808

BSNT_04599___    812 ATGAAATTAAGGATGCCTCAAAGTCTGTGCTGACTACAGGAATGATTGTG    861
                     |.||||||||.||.||||||.|..|.||||||||.|..||||||||.||.
RBAM_028320__    809 ACGAAATTAAAGACGCCTCACAACCGGTGCTGACGATGGGAATGATCGTC    858

BSNT_04599___    862 CTGATTGCTTCCATTGTGGCA--GGCGGAATTTTAATTCTGTTTATCGTT    909
                     ||....||.||||||.|  ||  ||.|||||||||||||||||.||.||.
RBAM_028320__    859 CTTGCAGCATCCATTAT--CATCGGGGGAATTTTAATTCTGTTGATTGTC    906

BSNT_04599___    910 CGTTCAATTACAAAACCGTTAAAACGTCTTGTTCAATCATCGAAAACGAT    959
                     .|.||.|||||...||||.|.|||||.|||||.|..||.||.|||...||
RBAM_028320__    907 AGATCCATTACGTCACCGCTGAAACGGCTTGTCCGCTCTTCTAAACAAAT    956

BSNT_04599___    960 CAGCAGGGGGGATCTGACCGAAACGATCGAAATCCATTCAAAGGATGAGC   1009
                     ||||.|.||.||..||||.|||||.||.||.||||..||.||.||||| .
RBAM_028320__    957 CAGCGGCGGAGACTTGACTGAAACCATTGATATCCGCTCGAAAGATGA-A   1005

BSNT_04599___   1010 TTGGG-GAGCTTGGGGAAAGCTTCAATGAAATGGGACAATCTCTCCGCTC   1058
                     ||||| ||.||.||.|..|||||.||||||||||||.|||||||.|||..
RBAM_028320__   1006 TTGGGCGAACTCGGCGCGAGCTTTAATGAAATGGGAGAATCTCTGCGCGG   1055

BSNT_04599___   1059 GCTGATCAGCGCTATTCAGGACTCGGTGAACAATGTGGCCGCATCTTCCG   1108
                     .|||||||||||.||.||..||||.||..||||.||||||||.||.||.|
RBAM_028320__   1056 ACTGATCAGCGCGATCCAAAACTCTGTCGACAACGTGGCCGCGTCATCGG   1105

BSNT_04599___   1109 AACAGCTTACCGCATCTGCCGGGCAGACGAGTAAAGCCACCGAGCATATT   1158
                     ||.||||.|||||.||.||...||||||.||.|||||.||.||.||||||
RBAM_028320__   1106 AAGAGCTGACCGCTTCAGCTTCGCAGACAAGCAAAGCGACGGAACATATT   1155

BSNT_04599___   1159 ACGATGGCGATTGAGCAGTTCTCAAACGGAAACGAGGAGCAAAGCGAAAA   1208
                     ||.|||||.|||||||||||.||||||||||||||.||||||||||||||
RBAM_028320__   1156 ACAATGGCCATTGAGCAGTTTTCAAACGGAAACGAAGAGCAAAGCGAAAA   1205

BSNT_04599___   1209 GGTTGAATCCAGCTC--TCATCAGCTGAACTTA-ATGAATGAAGGACTC-   1254
                     .||.||.||.|||||  |||  ||||||| |.| ||.|||||.|||||| 
RBAM_028320__   1206 AGTCGATTCAAGCTCAGTCA--AGCTGAA-TCATATAAATGACGGACTCG   1252

BSNT_04599___   1255 CAGCAAGTCTCACAAACATCGTCAGATATTACAAAGGCATCTATCCAATC   1304
                     |.|| .||.||.|..|||||.|||...|||||..|.|||||||..|||||
RBAM_028320__   1253 CCGC-CGTTTCCCGCACATCATCATCCATTACGGAAGCATCTAAACAATC   1301

BSNT_04599___   1305 AACGGAAATCGCCGG-AACGGGTGAGAAGTTTGTGCAGCAGACAGTCGGA   1353
                     .|.||||...||||| |.||||..|||| |.|||||||||.||.|||||.
RBAM_028320__   1302 GAAGGAAGCTGCCGGCACCGGGGAAGAA-TATGTGCAGCAAACCGTCGGG   1350

BSNT_04599___   1354 CAAATGAA-CTCGATTAATCAATCTGTTCAGCAGGCTGAAGCTGTTGTCA   1402
                     ||.||||| ||| ||.||||||||.||.||||||||.|||||.|||||.|
RBAM_028320__   1351 CAGATGAATCTC-ATCAATCAATCGGTCCAGCAGGCGGAAGCGGTTGTAA   1399

BSNT_04599___   1403 AAGGCTTAGAAGGAAAATCAAAAGACATCACAAGCATTTTGAGAGTCATC   1452
                     |||||.|.||.|..|||||||||||||||||....|||||.|||||||||
RBAM_028320__   1400 AAGGCCTTGAGGCCAAATCAAAAGACATCACTCATATTTTAAGAGTCATC   1449

BSNT_04599___   1453 AACGGAATCGCTGACCAAACAAATCTGCTTGCACTAAATGCAGCCATTGA   1502
                     |||||.||.||.||.||.|||||.||||||||..||||||||||||||||
RBAM_028320__   1450 AACGGTATTGCCGATCAGACAAACCTGCTTGCGTTAAATGCAGCCATTGA   1499

BSNT_04599___   1503 AGCGGCGCGTGCCGGAGAGTCAGGACGCGGCTTCTCTGTCGTAGCGGAGG   1552
                     ||||||..|.|||||.||.|..||.||.||||||||.||.|||||.||.|
RBAM_028320__   1500 AGCGGCAAGAGCCGGTGAATACGGCCGGGGCTTCTCAGTGGTAGCCGAAG   1549

BSNT_04599___   1553 AGGTGCGCAAGCTGGCTGTCCAATCAGCCGATTCAGCGAAAGAAATCGAA   1602
                     |.||||||||||||||.||||||||.||||.|||.||.|||||.||.|||
RBAM_028320__   1550 AAGTGCGCAAGCTGGCCGTCCAATCCGCCGGTTCTGCCAAAGAGATTGAA   1599

BSNT_04599___   1603 AAGCTGATCCAAGAAATCGTCGCAGAAATCGAAACCTCTCTTCACATGTT   1652
                     ||.||.||.||.||||||...||.||.||..|.||.||.|||||||||||
RBAM_028320__   1600 AAACTCATTCAGGAAATCACGGCTGAGATTAATACATCGCTTCACATGTT   1649

BSNT_04599___   1653 TAAAGAGGTCAATCAGGAAGTACAGTCCGGACTTGTTGTCACAGACAATA   1702
                     .|.|...||.|||.|.|||||.||.||||||||||..||.||.|||...|
RBAM_028320__   1650 CACATCCGTTAATGAAGAAGTTCAATCCGGACTTGCCGTAACGGACCGCA   1699

BSNT_04599___   1703 CAAAAGAAAGCTTCCAGAGCATTTTCAGCATGACAAACGAAATCGCAGGC   1752
                     |.||.|||||||||||||..||.|||.|||||||||||||.|||||.|..
RBAM_028320__   1700 CGAAGGAAAGCTTCCAGAATATCTTCGGCATGACAAACGACATCGCCGAG   1749

BSNT_04599___   1753 AAGCTGCAAACGATGAATTCCACCGTCGAGCAGCTGTCAGACCGTTCACA   1802
                     |||||.|||.|||||||...|||.||.||.||||||||||||.|.||.||
RBAM_028320__   1750 AAGCTTCAATCGATGAACGGCACGGTTGAACAGCTGTCAGACAGCTCTCA   1799

BSNT_04599___   1803 GCATGTTTCAGCAGCAGTCAGCGGCATTGCAGACGTGTCGAAAGAAAGCT   1852
                     |||.||||||||.|||||.|.||..|||||.|||||.||.|..||||||.
RBAM_028320__   1800 GCACGTTTCAGCCGCAGTGACCGATATTGCGGACGTATCTAGGGAAAGCG   1849

BSNT_04599___   1853 CGGCAAGCATCCAGGACATTGCCGCATCAGCTGAAGAACAGCTTGCTTCC   1902
                     |.||||||||.|||||.|||||||||||.||.||||||||||||||.||.
RBAM_028320__   1850 CAGCAAGCATTCAGGATATTGCCGCATCCGCAGAAGAACAGCTTGCATCA   1899

BSNT_04599___   1903 ATGGAAGAAATCAGTTCCTCAG-CGACCACTCTTGCGCAGATGGCAGAAG   1951
                     ||||||||||||||..|.||.| ||| .|||.|.|||||.|||||.||||
RBAM_028320__   1900 ATGGAAGAAATCAGCACATCCGCCGA-TACTTTGGCGCAAATGGCCGAAG   1948

BSNT_04599___   1952 AGCTTCGCGATCTGACGAAACAATTTAAAATCGAGTAA   1989
                     |.||.||.||..|.||||||||||||||||||.|.||.
RBAM_028320__   1949 AACTGCGGGAATTAACGAAACAATTTAAAATCAACTAG   1986


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