Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04608 and RBAM_028380
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:03
# Commandline: needle
# -asequence dna-align/BSNT_04608___yugS.1.9828.seq
# -bsequence dna-align/RBAM_028380___yugS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04608___yugS-RBAM_028380___yugS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04608___yugS-RBAM_028380___yugS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04608___yugS
# 2: RBAM_028380___yugS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1302
# Identity: 997/1302 (76.6%)
# Similarity: 997/1302 (76.6%)
# Gaps: 24/1302 ( 1.8%)
# Score: 3754.0
#
#
#=======================================
BSNT_04608___ 1 TTGCTTATTTTACAATTGATCGCCATTTTTGTTTTGATTGGCATT-ACGG 49
||||||||.|||.||.||||...||||.|..|.||.||.|| ||| ||||
RBAM_028380__ 1 TTGCTTATATTAAAACTGATTCTCATTATGCTGTTAATCGG-ATTAACGG 49
BSNT_04608___ 50 CTGTTTTCGTTGCAGCGGAATTTGCGATCGTCAAAATTAGAGGTTCAAAA 99
|..|.||.||.||.||||||||||||||.||||||||..|.|||||||||
RBAM_028380__ 50 CCATCTTTGTCGCTGCGGAATTTGCGATTGTCAAAATCCGCGGTTCAAAA 99
BSNT_04608___ 100 ATCAATCAGCTCATCGAAAGCGGTGACAGCCGAGCACTAGCCGCACATAA 149
|||....||||..|.||||.|||.||||||||.||.||.||.||.||.|.
RBAM_028380__ 100 ATCGCGGAGCTGGTTGAAACCGGAGACAGCCGGGCGCTCGCGGCGCACAG 149
BSNT_04608___ 150 AATCATCTCCAATCTTGACGAGTATTTATCAGCCTGCCAGCTCGGGATTA 199
..|.||.||.|||||.||.||.|||||||||||.|||||||||||.||||
RBAM_028380__ 150 GGTGATTTCAAATCTCGATGAATATTTATCAGCGTGCCAGCTCGGCATTA 199
BSNT_04608___ 200 CGATTACAGCCCTCGGCCTTGGGTGGCTTGGTGAACCTACATTTGAACGT 249
|||||||.||.|||||.||.||.|||||.||||||||.||..||.|.||.
RBAM_028380__ 200 CGATTACGGCGCTCGGACTCGGCTGGCTCGGTGAACCGACGATTCAGCGG 249
BSNT_04608___ 250 TTTCTTCATCCCTTATTTACA--ATGACAGGCATGCCGGAACCGTTTAAC 297
.|||||||||| |.|||.|| .|||..||.||||||..|.|..|||..
RBAM_028380__ 250 CTTCTTCATCC--TGTTTTCAGCCTGATCGGAATGCCGTCATCTATTACG 297
BSNT_04608___ 298 CACATTGTCACATTTGTAGTTGCATTTATCATCGTCACTTTTTTGCATGT 347
|||.|.|||||.|||.|.|..||.||||||..||||||.|.|.||||.||
RBAM_028380__ 298 CACGTCGTCACGTTTATTGCGGCGTTTATCGCCGTCACGTATCTGCACGT 347
BSNT_04608___ 348 GGTGATGGGGGAGCTTGCCCCGAAAACGGTTTCTATTCAAAAAGCTGAAG 397
.||.||.||.||||||||.|||||||||.|.||.|||||||||||.||||
RBAM_028380__ 348 TGTTATCGGAGAGCTTGCGCCGAAAACGATATCCATTCAAAAAGCCGAAG 397
BSNT_04608___ 398 CTGTAAGCTTATGGATTGCAAAGCCGCTGA-TCTGGTTTTATAAAATCAC 446
|.||.||..|.||||..|||||.|||||.| ||| ||||||||||.|.|.
RBAM_028380__ 398 CCGTCAGTCTGTGGACGGCAAAACCGCTCATTCT-GTTTTATAAAGTGAT 446
BSNT_04608___ 447 GTACCCGTTTATTAAAGCATTAAACGGCTCTGCAAGTTTTCTTGTGAAAT 496
|||.||||||||||||...|||||||||||.||..|.|||.|.||.||..
RBAM_028380__ 447 GTATCCGTTTATTAAACTGTTAAACGGCTCAGCCGGATTTTTGGTCAAGC 496
BSNT_04608___ 497 TGTTTGGCTTTCATTCAGTAAAGGAGCATCAGGTTGTCATCAGCGAGGAG 546
||||.||.||||||||.||.||.||.|||.||||.||..||||.||.||.
RBAM_028380__ 497 TGTTCGGTTTTCATTCGGTGAAAGAACATGAGGTCGTGGTCAGTGAAGAA 546
BSNT_04608___ 547 GAACTAAGACTGATCCTTTCAGAAAGCTATGAAAAGGGAGAAATCAATCA 596
|||.|..|.|||||..|.||.|||||||||.||||.||..||||||||||
RBAM_028380__ 547 GAATTGCGGCTGATTTTGTCCGAAAGCTATAAAAAAGGTCAAATCAATCA 596
BSNT_04608___ 597 GTCTGAATTCCGTTATGTAAATAAGATTTTTGAATTTGACAACCGGGTAG 646
.||||||||||||||.||.|||||.||.||||||||.||.||||||||.|
RBAM_028380__ 597 ATCTGAATTCCGTTACGTCAATAAAATATTTGAATTCGATAACCGGGTCG 646
BSNT_04608___ 647 CGAGAGAGATTATGATTCCGCGGACAGAAATTGCGGTTATCTCTCTGGAG 696
|.|||||.||.|||.|.|||||.||.|||||.||.|..|||||.||.||.
RBAM_028380__ 647 CCAGAGAAATCATGGTGCCGCGCACCGAAATCGCCGCCATCTCGCTTGAA 696
BSNT_04608___ 697 CAGTCGCTTGAAGAGGCAATTCATCACATCATTAATGAACGGTATACACG 746
|||||..||||.||.||.||.|||...|||||.||.|||||||||||.||
RBAM_028380__ 697 CAGTCAGTTGATGAAGCCATACATTTGATCATCAACGAACGGTATACGCG 746
BSNT_04608___ 747 CTACCCTGTCATCAAAGATGACAAGGATCATATTTTAGGGATCATCAACA 796
.||.||.||.||.||.||.|||||.|||||.|||.|.||.||.||.||||
RBAM_028380__ 747 ATATCCGGTTATTAAGGAAGACAAAGATCACATTCTCGGCATTATTAACA 796
BSNT_04608___ 797 GCAAAGATATGTTTAAAGCTTATTTTCTCGGCCAGC-CGAT-------AA 838
..||.|||.|.||||||||.||||||||||||| || |.|| ||
RBAM_028380__ 797 ATAAGGATTTATTTAAAGCGTATTTTCTCGGCC-GCTCCATTGAATTAAA 845
BSNT_04608___ 839 AGCTGGAGCAAATCATGAGGCCCGTTATCAGGGTCATTGAAAGCATTCCT 888
|| ||||.|||.|.||.||.|||||.||||||||||||||.||.
RBAM_028380__ 846 AG-------AAATTATGCGTCCGGTCATCAGAGTCATTGAAAGCATCCCC 888
BSNT_04608___ 889 GTTCAACAGCTTTTAATCCGCATGCAGAAGGAACGGATTCACATGGCGAT 938
|||||..|||||||.|||||||||||||||||.||||||||.||||||||
RBAM_028380__ 889 GTTCAGGAGCTTTTGATCCGCATGCAGAAGGAGCGGATTCATATGGCGAT 938
BSNT_04608___ 939 TCTCGTAGATGAATACGGGGGAACGGCGGGGCTTGTCACTGTAGAGGATA 988
||||||.||.||||||||.||.||||||||.|||||.||.||.||.||.|
RBAM_028380__ 939 TCTCGTTGACGAATACGGCGGCACGGCGGGACTTGTGACCGTCGAAGACA 988
BSNT_04608___ 989 TTATAGAGGAAATCGTCGGGGAAATCCGCGATGAGTATGATCAAGATGAA 1038
|..|.|||||||||||||||||||||||.|||||.|||||.||.||||||
RBAM_028380__ 989 TATTGGAGGAAATCGTCGGGGAAATCCGTGATGAATATGACCAGGATGAA 1038
BSNT_04608___ 1039 ACACCGCACATCCTGAAAAAGGGCGAGCACCATTATGTGATGGATGGAAA 1088
|..||.||||||.|.|||||.|||||.|||||||||||||||||.||.||
RBAM_028380__ 1039 ATGCCCCACATCGTCAAAAAAGGCGAACACCATTATGTGATGGACGGCAA 1088
BSNT_04608___ 1089 AGCGCTAATAGACGAAGTGAATGACCTTCTCGACATTGCGATTGAAAATG 1138
.|||||.|||||.||.||||||||.||.||.||.||.||.||||||||||
RBAM_028380__ 1089 GGCGCTTATAGAAGAGGTGAATGATCTCCTTGATATCGCCATTGAAAATG 1138
BSNT_04608___ 1139 AAGAAATTGATACGATTGCAGGCTGGCTTCTAACGCAAAAAATGGAACTG 1188
||||.|||||.||||||||.||||||||..||||.|||||||||||.|||
RBAM_028380__ 1139 AAGACATTGACACGATTGCCGGCTGGCTCTTAACACAAAAAATGGAGCTG 1188
BSNT_04608___ 1189 AAAGCAGGAGATGTGATACAAGCGGAGGGCTGTGAATTTAAAATCCTCGA 1238
|||...||.||||||.|.||.||.||.||.|||||||||||..|.||.||
RBAM_028380__ 1189 AAAAATGGTGATGTGTTTCATGCCGAAGGGTGTGAATTTAAGGTGCTGGA 1238
BSNT_04608___ 1239 CGCCGAAGATCATCACATCCGTTTTGTAGAAATTAAAAAAACTGATTTTT 1288
.||.|||||.|||||.|||||.||.||.||||||||||||||||||||.|
RBAM_028380__ 1239 AGCGGAAGACCATCATATCCGCTTCGTTGAAATTAAAAAAACTGATTTCT 1288
BSNT_04608___ 1289 AA 1290
.|
RBAM_028380__ 1289 GA 1290
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