Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04626 and RBAM_028500
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:04
# Commandline: needle
# -asequence dna-align/BSNT_04626___alaT.1.9828.seq
# -bsequence dna-align/RBAM_028500___alaT.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04626___alaT-RBAM_028500___alaT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04626___alaT-RBAM_028500___alaT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04626___alaT
# 2: RBAM_028500___alaT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1175
# Identity: 860/1175 (73.2%)
# Similarity: 860/1175 (73.2%)
# Gaps: 52/1175 ( 4.4%)
# Score: 3072.5
#
#
#=======================================
BSNT_04626___ 1 ATGACTTCGTATTTATCAGACTATGTACAACAAATAAAACCATCCGGCAT 50
||.||.||.||.|||||.||.|||||
RBAM_028500__ 1 ------------------------GTGCAGCAGATTAAACCGTCAGGCAT 26
BSNT_04626___ 51 CCGCAAATTCTTTGATTTGGCGGCAACGATGGAAGGCGTCATTTCTTTAG 100
||||||||||||||||.||||.||.||||||||||||||||||||..|.|
RBAM_028500__ 27 CCGCAAATTCTTTGATCTGGCCGCTACGATGGAAGGCGTCATTTCACTGG 76
BSNT_04626___ 101 GCGTCGGCGAGCCTGATTTTGTTACCGCGTGGAATGTCCGCGAAGCAAGC 150
|.||.||.||||||||.|||||.||.||.|||||.||..|.|||||.||.
RBAM_028500__ 77 GAGTGGGAGAGCCTGACTTTGTGACGGCTTGGAACGTGAGGGAAGCGAGT 126
BSNT_04626___ 151 ATTCTCTCTCTTGAACAAGGATATACGTCATACACGGCCAATGCGGG--T 198
|||||.|||.|.|||||.||.||||||.|.||.||.||.|||||||| |
RBAM_028500__ 127 ATTCTTTCTTTAGAACAGGGTTATACGGCTTATACCGCAAATGCGGGTCT 176
BSNT_04626___ 199 TTAT--ACTCATTGCGGGAGGAAATCAGCCGTTATTT-GAGCAACAGGTT 245
|||| || ||.|.||.|||||||||.||||||| ||.||.| ||||
RBAM_028500__ 177 TTATGAAC----TGAGAGAAGAAATCAGCAGTTATTTAGATCAGC-GGTT 221
BSNT_04626___ 246 TGATCTTAGCTACTCGCCAGATAATGAGCTGATTGTGACAGTGGGTGCAA 295
.|..||.||.||.|||||.||.|.|||.|||||.||.||.||.||.||||
RBAM_028500__ 222 CGGCCTGAGTTATTCGCCTGACAGTGAACTGATCGTTACTGTAGGGGCAA 271
BSNT_04626___ 296 GTCAGGCTTTGGATATTGCGATCCGCGCCATTGTGAATCCAGGTGAGGAA 345
|.|||||..|.|||.|.||..|||||||||||.|||||||.||.||||||
RBAM_028500__ 272 GCCAGGCGCTTGATCTCGCTGTCCGCGCCATTATGAATCCTGGAGAGGAA 321
BSNT_04626___ 346 GTCATCATTCCTGAGCCGTGTTTTGTGGCGTACGATGCGCTTGTTTCTTT 395
.|..|.|||||.||.|||||||||||.||.||.||..|.||.||..|..|
RBAM_028500__ 322 ATGTTAATTCCCGAACCGTGTTTTGTCGCATATGAATCACTCGTGACCCT 371
BSNT_04626___ 396 GGCAGGCGGTATCCCGGTTCACG-TTCATACAACGGCAGACAAAGGATTT 444
|.|.||.|..|..|||||.| || ||||.||....||.|..|||||.||.
RBAM_028500__ 372 GACGGGGGCGAAGCCGGTGC-CGATTCAGACTGTCGCTGCAAAAGGTTTC 420
BSNT_04626___ 445 AAAGCAACGGCTGCTGATTTTGAAGCGGCAGTCACTGAAAAAACAAAGGC 494
||||||.|..|.||.||||||||||||||..|.||.||.||||||||.||
RBAM_028500__ 421 AAAGCATCCCCAGCCGATTTTGAAGCGGCCCTGACGGACAAAACAAAAGC 470
BSNT_04626___ 495 CATTCTCATCTGCTCACCATCGAATCCGACAGGTTCGGTTTATTCGAAGG 544
..|.||..|.|||||.||.||.||||||||||||||.||.||||||||.|
RBAM_028500__ 471 GCTGCTTCTATGCTCGCCGTCAAATCCGACAGGTTCCGTCTATTCGAAAG 520
BSNT_04626___ 545 AAGAGC-TGAATGAGATTGCTGAGTTTGCCAAAAAACATGATGTCATCGT 593
|||||| ||||| ..||.||||..||.||..|||||||.||..|.|||||
RBAM_028500__ 521 AAGAGCTTGAAT-CCATCGCTGCTTTCGCTGAAAAACACGACTTGATCGT 569
BSNT_04626___ 594 -CTTAGCCGACGAGATCTACGCGGAGCTGACATATGATGAGGAATTTACA 642
||| |||||.||.||.||.||.||||||||.|||||||||..|||.||.
RBAM_028500__ 570 GCTT-GCCGATGAAATTTATGCCGAGCTGACGTATGATGAGCCATTCACG 618
BSNT_04626___ 643 AGTATAGCGG-CATTACCG-GGAATGAAGGAACGGACGGTAGTCATCTCA 690
||.||.|.|| ||| ||| ||.|||||||||||.|||||..||||.||.
RBAM_028500__ 619 AGCATGGGGGCCAT--CCGCGGCATGAAGGAACGCACGGTTCTCATTTCC 666
BSNT_04626___ 691 GGCTTTTCAAAAGCATTTGCAATGACGGGCTGGAGGCTCGGTTTTGCTGC 740
|||||.||.|||||||||||.||||||||.|||||.|||||.|||.|.||
RBAM_028500__ 667 GGCTTCTCCAAAGCATTTGCCATGACGGGATGGAGACTCGGATTTACGGC 716
BSNT_04626___ 741 GGCACCATCCTTGCTTCGGGATGCCATGCTTAAAATTCATCAGTATGCGA 790
|||.||..||.||.|..|||||||||||||.||||||||||||.|.||||
RBAM_028500__ 717 GGCGCCTCCCGTGATCAGGGATGCCATGCTCAAAATTCATCAGCACGCGA 766
BSNT_04626___ 791 TGATGTGCGCGCCCGCAATGGCGCAGTTTGCCGCCCTTGAAGGCCTGAAG 840
|||||||||||||..|.|||||.||||..||.||.||||||||.|||||.
RBAM_028500__ 767 TGATGTGCGCGCCTTCCATGGCTCAGTACGCGGCGCTTGAAGGGCTGAAA 816
BSNT_04626___ 841 AACGGCATGGAAGACGTAGAAAAAATGAAAAAAAGCTATCGAAGAAGACG 890
||||||..|||||||||.||||.||||||.|||||||||||.|||.|.||
RBAM_028500__ 817 AACGGCCAGGAAGACGTCGAAAGAATGAAGAAAAGCTATCGGAGACGCCG 866
BSNT_04626___ 891 GAATCTGTTTGTAGAATCGCTCAATGAAATCGGTCTCAGCTGTCATCATC 940
.||.|||.||||.||..|..|.||.||||||||.|||.||||.||.||.|
RBAM_028500__ 867 AAACCTGATTGTGGAGACATTGAACGAAATCGGACTCGGCTGCCACCACC 916
BSNT_04626___ 941 CGGGCGGCGCTTTCTATGCTTTTCCATCTATTAAAAGCACGGGAATGAGT 990
|.|||||.||.||.||.||.|||||.||.|||.|....||.||.||||||
RBAM_028500__ 917 CCGGCGGAGCATTTTACGCCTTTCCTTCCATTCAGTCGACCGGCATGAGT 966
BSNT_04626___ 991 TCAGAACAGTTTGCCGAGGAGCTTCTGACGCAGGAAAAAGTGGCCGTTGT 1040
||||||.|.||.||.||..||||.||.|...|.||||||||.|||||.||
RBAM_028500__ 967 TCAGAAGAATTCGCGGAACAGCTGCTCATTGAAGAAAAAGTAGCCGTCGT 1016
BSNT_04626___ 1041 TCCTGGAAGTGTGTTTGGTCCGAGCGGTGAGGGTTATATCCGTTGTTCAT 1090
|||.||.|.|||.||.||.||||||||.||.||.||.|||.|.|||||.|
RBAM_028500__ 1017 TCCGGGGAATGTATTCGGCCCGAGCGGCGAAGGCTACATCAGATGTTCCT 1066
BSNT_04626___ 1091 ACGCAACCTCGATTGAACAGCTTCAAGAAGCGTTAGTCAGAATGAAACGC 1140
|.||.||.||.|||||.|||.||||.||||||.|.||||||||.|||||.
RBAM_028500__ 1067 ATGCGACATCCATTGAGCAGATTCAGGAAGCGCTCGTCAGAATTAAACGG 1116
BSNT_04626___ 1141 TTCCTGCACAAAACAA----CATAA 1161
|| ||...||| || |||||
RBAM_028500__ 1117 TT--TGTTGAAA--AAGGGGCATAA 1137
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