Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04634 and RBAM_028550

See Amino acid alignment / Visit BSNT_04634 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:05
# Commandline: needle
#    -asequence dna-align/BSNT_04634___kinB.1.9828.seq
#    -bsequence dna-align/RBAM_028550___kinB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04634___kinB-RBAM_028550___kinB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04634___kinB-RBAM_028550___kinB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04634___kinB
# 2: RBAM_028550___kinB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1360
# Identity:     889/1360 (65.4%)
# Similarity:   889/1360 (65.4%)
# Gaps:         149/1360 (11.0%)
# Score: 2579.0
# 
#
#=======================================

BSNT_04634___      1 ATGGAAATTCTAAAAGACTATCTTCTGCACATCTGCTTTATTTTGTTTCC     50
                     |||||.|||.||||.||.||.||.||.|||.|||..||||||||.||.||
RBAM_028550__      1 ATGGAGATTGTAAAGGATTACCTGCTTCACTTCTCTTTTATTTTATTCCC     50

BSNT_04634___     51 TATTCTTCTTTACCAAGTGTTTTGGCTTGGAAAACCTGCGATT--CTTGT     98
                     ||||.|||||||.|||||.||.|||||..|.||.||  |||||  |||||
RBAM_028550__     51 TATTTTTCTTTATCAAGTCTTCTGGCTCAGCAAGCC--CGATTTGCTTGT     98

BSNT_04634___     99 GCCAAAAATAAACAGCGGTTTGGTCACGCTCTTCGCCTGCGGCG----CC    144
                     |||.|.|...|||.||....|||||.|..|.||    |||.|||    |.
RBAM_028550__     99 GCCGAGAGCGAACCGCCTGCTGGTCGCCGTATT----TGCAGCGTCATCT    144

BSNT_04634___    145 TCCGTTTTATGCATTA----TTTTCCCGATTCATGAAATGGACTACATAC    190
                     |||.|.|||||   ||    ||||||| ||.||.||..|..|.|.|.|.|
RBAM_028550__    145 TCCTTATTATG---TACGGCTTTTCCC-ATCCAGGAGCTTCATTCCGTCC    190

BSNT_04634___    191 AATACGGCCTTCAGATGATTCCCGTTATCATTTG-----TTTATTTTACA    235
                     ..|||||..|.|||.||||||||.|||||.|.||     ||||||     
RBAM_028550__    191 GTTACGGTTTGCAGCTGATTCCCATTATCGTCTGCCTGCTTTATT-----    235

BSNT_04634___    236 TTAGTACCGCTTCCGGACTT---ACAGTCGCCGCATCTGTCCTATGTTTT    282
                     ...|||||||..|.||||||   .|||..||.|||||   |.|.|.||||
RBAM_028550__    236 CCGGTACCGCCGCAGGACTTGCCGCAGGGGCGGCATC---CGTTTTTTTT    282

BSNT_04634___    283 GAACTGCTTT--TTTACGAACCTTCCGCAATGTTTGTTTTCACTTTGCTG    330
                     .|.||..|.|  |||  |||||||||||..|.|||.|.||..|.||..|.
RBAM_028550__    283 CAGCTCATATGGTTT--GAACCTTCCGCTCTTTTTTTCTTATCCTTAATT    330

BSNT_04634___    331 CCTTTTCTTATCATTATCCCAATCTTATTTCAG----AAA--AAATGGCC    374
                     ||||||.|.|||||.|||||.|||      |||    |||  ||||||||
RBAM_028550__    331 CCTTTTTTAATCATCATCCCTATC------CAGCTCCAAACGAAATGGCC    374

BSNT_04634___    375 ATTCATGTCCAAAGC-GAAAAAACTGCT----GCTGTCTTTATTGATCAG    419
                      ||..|.|.|||||| |||.||||||||    ||  ||||  .|.|||.|
RBAM_028550__    375 -TTTTTTTTCAAAGCGGAAGAAACTGCTTTTCGC--TCTT--CTCATCGG    419

BSNT_04634___    420 CTGCGTGGAGATTTTCC----TATTTTTCGCCTCAAGCTGGATTCTA-TC    464
                     ||||...||.|    ||    ||||...|||.||...||..| |||| ||
RBAM_028550__    420 CTGCACTGAAA----CCGCCTTATTAACCGCATCTGTCTTCA-TCTATTC    464

BSNT_04634___    465 CGCCTTGAATATTTTAAATTTTCAAA---AATCAGGAATTTTCGT---TT    508
                     |||....||||||||.||||||||||   .|||      ||.|||   ||
RBAM_028550__    465 CGCGACCAATATTTTCAATTTTCAAACTCTATC------TTCCGTTTATT    508

BSNT_04634___    509 ACGAGGCGGCAGTCTCAGGGCTTTTCCGCTC----CAGTGTTCTTCTATT    554
                     |.|||||||||||.||.|...||||    ||    |||.|..|||.|..|
RBAM_028550__    509 ATGAGGCGGCAGTATCTGTTTTTTT----TCAAGTCAGCGCCCTTTTGCT    554

BSNT_04634___    555 AAGCATCTATATTATCGAAAGCATCGCCGAAAATATCG-CCCTGCGCTCA    603
                     ..||||.|||.|.||.||.|.|||.|..||.||| .|| ||.||||..||
RBAM_028550__    555 GTGCATTTATTTGATTGAGATCATTGATGAGAAT-GCGTCCATGCGGGCA    603

BSNT_04634___    604 CAGCTTATCCATTCTGAAAAAATGACGATTGTGAGTGAACTGGCAGCGAG    653
                     ..|||.||.||.||.|||||||||.|..|.||.||.||.||.||.||.||
RBAM_028550__    604 AGGCTGATTCACTCAGAAAAAATGGCCGTCGTCAGCGAGCTTGCGGCAAG    653

BSNT_04634___    654 CGTCGCCCATGAGGTCAGGAATCCGCTGACAGTTGTCCGCGGGTTTGTCC    703
                     ||||||||||||.|||.|.||||||||.||.||.|||.|.||.|||||.|
RBAM_028550__    654 CGTCGCCCATGAAGTCCGCAATCCGCTTACGGTCGTCAGAGGTTTTGTGC    703

BSNT_04634___    704 AGCTGCTTTTTAATGACGAAACCCTACAAAACAAGT-CGAGTGCGGATTA    752
                     |||||||.||.|..|.|||....||.||..||||.| |.|.|.|||||..
RBAM_028550__    704 AGCTGCTGTTCAGCGGCGAGCAGCTTCAGGACAAATCCCACTCCGGATAT    753

BSNT_04634___    753 CAAAAAGCTTGTACTGTCAGAGCTTGACCGGGCGCAAGGC-ATTATTACA    801
                     ||.||| |||||.|||||.||.||.||||||||.| ||.| ||.|||||.
RBAM_028550__    754 CAGAAA-CTTGTGCTGTCCGAACTCGACCGGGCTC-AGACGATCATTACG    801

BSNT_04634___    802 AACTATCTCGATATGGCCAAACAGCA--ATTATACGAAAAAGAGGTTTTT    849
                     ||.||||||||||||||.||.|||.|  |.|||  ||||||||....|||
RBAM_028550__    802 AATTATCTCGATATGGCGAAGCAGGATGACTAT--GAAAAAGAAAAGTTT    849

BSNT_04634___    850 GACCTA----TCAGCCCTTATCAAAGAGACAAGCTCCCTTATGGTGTCGT    895
                     ||  ||    ||.||.|.||  ||.||.|||.|.|||.|.||||.|||.|
RBAM_028550__    850 GA--TATTTCTCTGCTCGTA--AAGGAAACAGGTTCCTTAATGGAGTCTT    895

BSNT_04634___    896 ACGCCAATTACAAGTCAGTAACCGTCGAGGCT-GAAACAGAACCGGAACT    944
                     |.|||||||..||.||.||.|||||...||.| |||.| ||.||.||   
RBAM_028550__    896 ATGCCAATTTTAAATCGGTGACCGTTACGGTTCGAAGC-GAGCCTGA---    941

BSNT_04634___    945 TTTGATA----TACGGAGACGCAACAAAGCTGAAGCAGGCTGTCATCAAC    990
                      ||.|||    |.|||.||.|.||.|||.|||||.|||||..||||.||.
RBAM_028550__    942 -TTTATATGTGTTCGGCGATGTAAAAAAACTGAAACAGGCCTTCATTAAT    990

BSNT_04634___    991 CTGATGAAAAACAGTATTGAAGCAGT-TCCTC-----ACGG--GAAGGGG   1032
                     |||||.|||||||||||||||||.|| .||||     ||||  ||     
RBAM_028550__    991 CTGATTAAAAACAGTATTGAAGCCGTGCCCTCTGAAAACGGCCGA-----   1035

BSNT_04634___   1033 ATGATCCACATATCAG-CCAAAA----GAAACGGCCATACGATCATGATT   1077
                        |||.|..|.||.| ||||||    |||     .|.|.|||..|.|||
RBAM_028550__   1036 ---ATCGAGGTCTCCGTCCAAAAACAGGAA-----GAGATGATTCTCATT   1077

BSNT_04634___   1078 AACATCACAGACAATGGGGTCGGGATGACAGACCATCAAATGCAAAAACT   1127
                     .|.||.||.||.||.||..||||.|||.|.||..|..||.||||.|||||
RBAM_028550__   1078 CAGATTACGGATAACGGAATCGGCATGTCCGATGAAGAACTGCAGAAACT   1127

BSNT_04634___   1128 CGGCGAACCTTATTATTCCTTAAAAACGAACGGAACGGGACTCGGCCTCA   1177
                     ||||.||||.||||||.|..|.|||||||||||.||.||.|||||.||.|
RBAM_028550__   1128 CGGCAAACCGTATTATACGCTGAAAACGAACGGCACCGGGCTCGGGCTTA   1177

BSNT_04634___   1178 CCGTAACCTTTTCCATTATTGAACATCATCACGGGACCATTTCATTTAAC   1227
                     ||||.||.||.||.||||||.|.||||||.|.||..||.|.|..||.|.|
RBAM_028550__   1178 CCGTGACATTCTCGATTATTCAGCATCATGAAGGCTCCGTCTGTTTCACC   1227

BSNT_04634___   1228 AGCAGCTTCCAAAAAGGCACTACGGTGACCATTAAGCTTCCCGCTGATCT   1277
                     |||.||...||....|||||.||||...|..|.|.||||||.||.|.|.|
RBAM_028550__   1228 AGCGGCGAGCACTCGGGCACAACGGCCTCAGTCAGGCTTCCGGCAGCTGT   1277

BSNT_04634___   1278 TCCTCACTAG   1287
                        |||||||
RBAM_028550__   1278 ---TCACTAG   1284


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