Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04655 and RBAM_028710

See Amino acid alignment / Visit BSNT_04655 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:07
# Commandline: needle
#    -asequence dna-align/BSNT_04655___mrpD.1.9828.seq
#    -bsequence dna-align/RBAM_028710___mrpD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04655___mrpD-RBAM_028710___mrpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04655___mrpD-RBAM_028710___mrpD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04655___mrpD
# 2: RBAM_028710___mrpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1511
# Identity:    1135/1511 (75.1%)
# Similarity:  1135/1511 (75.1%)
# Gaps:          40/1511 ( 2.6%)
# Score: 4130.5
# 
#
#=======================================

BSNT_04655___      1 ATGATCAACATGAATAATTTTGTTATTTTGCCAATCCTGATCCCGCT-TT     49
                     |||||||||||||||||.|||||.||.|||||.||.|||.|.||||| .|
RBAM_028710__      1 ATGATCAACATGAATAACTTTGTGATATTGCCTATTCTGGTGCCGCTGCT     50

BSNT_04655___     50 TGTCGGCTATTCTTCTGATTTTCATGACGAAGAACCTTATGCTCATGAGA     99
                     || |.||..|.||.||||||||.||||..|.|.||.|.|||||.|||.|.
RBAM_028710__     51 TG-CCGCAGTGCTGCTGATTTTTATGAACAGGCACGTGATGCTGATGCGG     99

BSNT_04655___    100 ATCTTCAGCACGGCGGCATC------GGCCATCGGGATTGTGATTAGCGG    143
                     .|.||||||||.||.||.||      ..|||||      ||.||.||||.
RBAM_028710__    100 GTATTCAGCACTGCCGCTTCCTGTGTCTCCATC------GTCATCAGCGC    143

BSNT_04655___    144 CATACTTGTACAGACTGTCTTCACAAAAGGTATCCAGACACTCAGCTTAG    193
                     |...||.||.|||||.||.||||||.|.||.||.|||||.||.|...|.|
RBAM_028710__    144 CGCTCTCGTTCAGACGGTTTTCACACACGGGATTCAGACGCTGACACTCG    193

BSNT_04655___    194 GCGGCTGGAAAGCGCCGTACGGCATTGTGCTTGCCGCAGACCAATTCGCC    243
                     |||||||||||||||||||||||||||||||.|||||.||.||..|.|||
RBAM_028710__    194 GCGGCTGGAAAGCGCCGTACGGCATTGTGCTCGCCGCGGATCAGCTTGCC    243

BSNT_04655___    244 AGC-CTGCTCGTTCTCACAACAGCGATCATCGGTTTATTGGTTGGGCTTT    292
                      || |||||.|||.|.|||||.||.||.|||||..|..|.||....||.|
RBAM_028710__    244 -GCACTGCTTGTTTTGACAACCGCCATAATCGGGCTGCTCGTCACCCTGT    292

BSNT_04655___    293 ATTCCTTCCGTTCTGTCGGTGAAAAACGGGAGCGCTCCTTTTACTACTCC    342
                     |.||||||||.||..||||.||||||.||||||||.|.||.||.||.||.
RBAM_028710__    293 ACTCCTTCCGCTCCATCGGAGAAAAAAGGGAGCGCGCTTTCTATTATTCA    342

BSNT_04655___    343 GGCGTTCAG-TTCTTGCTTGCCGGCGTCAGCGGAGCGTTTTTAACAGGCG    391
                     ||.||.||| ||||| ||.||||||||.||||||||||||||.||.||.|
RBAM_028710__    343 GGGGTGCAGTTTCTT-CTGGCCGGCGTAAGCGGAGCGTTTTTGACGGGTG    391

BSNT_04655___    392 ATTTATTTAATATGTACGTATTTTTTGAGCTTCTGCTTATTGCTTCCTAT    441
                     |..|.||.||.||||||||.||||||||||||||||||||.||.|||||.
RBAM_028710__    392 ACCTGTTCAACATGTACGTCTTTTTTGAGCTTCTGCTTATCGCGTCCTAC    441

BSNT_04655___    442 ATGCTGATTGTATTAGGCGGTACAAAAATTCAGCTGCTGGAATCCCTTAA    491
                     ||||||||.||..|.|||||.||.||||||||..|....|||||..|.||
RBAM_028710__    442 ATGCTGATCGTGCTTGGCGGAACGAAAATTCAATTAAGAGAATCATTGAA    491

BSNT_04655___    492 ATATATCGTGTTTAATATCGTATCGTCTGCCCTGTTTGTCATAGGGGTCG    541
                     .||||||||||||||.||.||.||.||.||..|.||||||||.||.||||
RBAM_028710__    492 GTATATCGTGTTTAACATTGTGTCATCCGCGTTTTTTGTCATCGGCGTCG    541

BSNT_04655___    542 GCTTTTTATACGCTGTAACCGGCACGTTAAACATGGCGGATCTTAGCGTG    591
                     |.|..|||||.||.||.||.||||||.|.||.|||||.||.||.|||||.
RBAM_028710__    542 GTTACTTATATGCGGTGACGGGCACGCTGAATATGGCTGACCTAAGCGTA    591

BSNT_04655___    592 AAAATCAGCGAAACAGGACAAACCGGGCTGATCACTGTGATTGGTGTCCT    641
                     |||||.||||||.|.||.||.|||||||||||.||.||.||.||.|||||
RBAM_028710__    592 AAAATAAGCGAATCGGGCCAGACCGGGCTGATAACCGTCATCGGCGTCCT    641

BSNT_04655___    642 GATGCTTTTGGTATTTGGCATGAAGGGCGGAATCTTCCCCCTCTACTTTT    691
                     ..|.||..|.||.||.||..|.||||||||.||.|||||.||.||.||.|
RBAM_028710__    642 TCTTCTCGTCGTTTTCGGTTTAAAGGGCGGGATATTCCCGCTGTATTTCT    691

BSNT_04655___    692 GGCTTCCAGGCTCTTATTACGCGCCACCGGCGGCAATCTCCGCGTTGTTC    741
                     ||.|.||.||||||||||||||.||.|||||.||.||.||.||.||.|||
RBAM_028710__    692 GGATGCCGGGCTCTTATTACGCCCCGCCGGCTGCGATTTCGGCCTTATTC    741

BSNT_04655___    742 GG--CGCTTTGCTGACAAAAGTCGGGTTATATTCGATTGCGAGGGTTTTC    789
                     ||  |.||||  ||||.||||||||..|.||..|.|||...||.||.|||
RBAM_028710__    742 GGGTCTCTTT--TGACGAAAGTCGGCCTGTACGCCATTTTAAGAGTATTC    789

BSNT_04655___    790 ACATTGATTTTTATTCACGATACAGCCTTTACCCATCAGCTGATGATTTG    839
                     ||..||||.||||||||||||||.|.|||||||||.||..|||||||.||
RBAM_028710__    790 ACCCTGATCTTTATTCACGATACGGGCTTTACCCACCAATTGATGATGTG    839

BSNT_04655___    840 GCTGGCGGCGCTGACTGTGATTTTCGGTGTGATCGGTTCACTCGCTTATT    889
                     |||.|||..||||||.|||.|.|||||.||.|||||.||..||||.|.||
RBAM_028710__    840 GCTTGCGATGCTGACGGTGTTATTCGGCGTAATCGGATCTATCGCCTTTT    889

BSNT_04655___    890 CGAATGTCATGAAAATTGTGATCTATAACATTATTACCGCTGTCGGCGTG    939
                     ||.|||||||||||||.||.|||||.||.||||||||.||.|||||||||
RBAM_028710__    890 CGGATGTCATGAAAATCGTCATCTACAATATTATTACAGCCGTCGGCGTG    939

BSNT_04655___    940 ATTTTGTTCGGTGTAGCAGTACACACCCCCGCATCCATTCAGGGCGCGAT    989
                     |||||||||||..|.||..|..||||.||.||.||||||||.||.|||.|
RBAM_028710__    940 ATTTTGTTCGGCATTGCCATGAACACGCCGGCCTCCATTCAAGGAGCGGT    989

BSNT_04655___    990 CTACTATCTGATTCACGATATGCTGATTAAGGGCGCTTTGTTTATGCTGG   1039
                     .||.||..||||||||||||||||||||||.||.||..||||||||||.|
RBAM_028710__    990 TTATTACTTGATTCACGATATGCTGATTAAAGGAGCGCTGTTTATGCTCG   1039

BSNT_04655___   1040 CGGGTACGCTGATCGCATTGACTGGAACTGCGAACCTGCATAAAATGGGC   1089
                     |.||.|||||.|||||.|||||.||.|||||.|.||||||||||||||||
RBAM_028710__   1040 CCGGCACGCTTATCGCTTTGACAGGCACTGCCAGCCTGCATAAAATGGGC   1089

BSNT_04655___   1090 GGGCTGATCAAACGCTATCCTGTTCTTGGATGGATGTTTTTCATTTCTGC   1139
                     ||.|||||||..||.|||||.|||.|.|||||||||||.||.||.||.||
RBAM_028710__   1090 GGACTGATCACCCGTTATCCCGTTTTGGGATGGATGTTCTTTATCTCAGC   1139

BSNT_04655___   1140 TATTTCTCTTGCAGGCATTCCGCCACTGAGCGGATTTGTCGGCAAATTTA   1189
                     .||.|||||.||.|||||.|||||..|.|||||||||||.|||||..|.|
RBAM_028710__   1140 CATATCTCTGGCCGGCATCCCGCCGTTCAGCGGATTTGTGGGCAAGCTGA   1189

BSNT_04655___   1190 AAATTGCGGAGGGCGGCTTCGCAGAAGGTG---AATTTACGATATCCATG   1236
                     |.||.|||||.|||||.|||| |.||||.|   |.|||  |.|.|||.|.
RBAM_028710__   1190 AGATCGCGGAAGGCGGGTTCG-ATAAGGGGGAAACTTT--GTTTTCCGTA   1236

BSNT_04655___   1237 CTGATTCTGCTT-TCAAGTCTGCTCGTACTGTACTCTGTGCTGAGGATCT   1285
                     .||||||| ||| |||||.|||||.||.||.||.||.|||||||.|.|.|
RBAM_028710__   1237 TTGATTCT-CTTATCAAGCCTGCTTGTGCTCTATTCCGTGCTGAAGGTTT   1285

BSNT_04655___   1286 TTA-TACATGCGTTTTGGGGCGAAGAAAAAGAAA----CGCCAAAACCAA   1330
                     ||| .|| .||.||||||||.|||||||||||||    ||.|..|..|..
RBAM_028710__   1286 TTACGAC-GGCTTTTTGGGGGGAAGAAAAAGAAATCCCCGGCGCAGGCGG   1334

BSNT_04655___   1331 ATCATCGAACAGCTAAAGGACTTCTTTATCCGGCAGCTATTTTTCTCTTG   1380
                     |    ||..|.||.|||||||||||||||||||||||...|||||||.|.
RBAM_028710__   1335 A----CGGTCCGCAAAAGGACTTCTTTATCCGGCAGCCGCTTTTCTCCTT   1380

BSNT_04655___   1381 CTGTCTCTTCTCTTCGGATTGGGTACAGAATGGGTGTCGCCTTACGTTGA   1430
                     .||||.|||||.|||||..|.||.||.||||||||.||.||.||.||..|
RBAM_028710__   1381 TTGTCGCTTCTGTTCGGGCTCGGAACCGAATGGGTTTCACCGTATGTCAA   1430

BSNT_04655___   1431 TCAAGCGGCCGAGACGCTGCTGAATCCGGAAAAATATATCGAAGCTGTTC   1480
                     |||..||||.||||..||||||||||||||||||||.||.|||||||||.
RBAM_028710__   1431 TCAGACGGCTGAGAATCTGCTGAATCCGGAAAAATACATTGAAGCTGTTT   1480

BSNT_04655___   1481 TGAAGGAGTAG   1491
                     |||||||||||
RBAM_028710__   1481 TGAAGGAGTAG   1491


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