Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04661 and RBAM_028760

See Amino acid alignment / Visit BSNT_04661 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:08
# Commandline: needle
#    -asequence dna-align/BSNT_04661___comA.1.9828.seq
#    -bsequence dna-align/RBAM_028760___comA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04661___comA-RBAM_028760___comA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04661___comA-RBAM_028760___comA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04661___comA
# 2: RBAM_028760___comA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 648
# Identity:     516/648 (79.6%)
# Similarity:   516/648 (79.6%)
# Gaps:           6/648 ( 0.9%)
# Score: 2054.0
# 
#
#=======================================

BSNT_04661___      1 ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCAC     50
                     ||||||||||||||||||||||||||.|||||||||||||||||.|||||
RBAM_028760__      1 ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCAC     50

BSNT_04661___     51 CAAGACAATTTTGGAAACGGATTCGAATTTGTCTGTTGATTGTCTCAGTC    100
                     ||||||.|||.||||||||||..|||||.|.|||||.|||||.|||||||
RBAM_028760__     51 CAAGACGATTCTGGAAACGGACACGAATCTTTCTGTCGATTGCCTCAGTC    100

BSNT_04661___    101 CTGAACCGAGCGAACAGT---TTATCAAGCAGCATGATTTCTCGTCATAT    147
                     ||||..|.||.|||||.|   ||.||   |.|||||||||.||..|.||.
RBAM_028760__    101 CTGATGCCAGTGAACAATTCGTTCTC---CGGCATGATTTTTCAGCTTAC    147

BSNT_04661___    148 GATCTCATTTTAATGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGA    197
                     ||||||||.|||||||||.|.|||||.||.|..||..|||..||.||.||
RBAM_028760__    148 GATCTCATATTAATGGATTTAAATCTGGGTGATGACATCAGCGGCATAGA    197

BSNT_04661___    198 GCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATTATCGTGT    247
                     ||||||.||..|.||.|||.||||||||||||..||||||||.||.||.|
RBAM_028760__    198 GCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATCATTGTCT    247

BSNT_04661___    248 ATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGT    297
                     |.||.||.||||||||.||.||||||||.||.|||.|.||.||.|||||.
RBAM_028760__    248 ACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGC    297

BSNT_04661___    298 CTGCACGGTGCCATCAGCAAAACGGAATCTAAAGAAAAGATCACCCAATA    347
                     |||||.||.||||||||||||||.|||||||||||.||.||||..|||||
RBAM_028760__    298 CTGCATGGCGCCATCAGCAAAACCGAATCTAAAGAGAAAATCATGCAATA    347

BSNT_04661___    348 CATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTA    397
                     ||||||.|||||.|||||.|||.|.||||||||.|||||..|.||.||.|
RBAM_028760__    348 CATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCA    397

BSNT_04661___    398 AACAGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAA    447
                     |||||||||||||.||||||||||||||..||.||.|||||.||||||..
RBAM_028760__    398 AACAGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGT    447

BSNT_04661___    448 GAACAAGATGTGCTCACACCTAGAGAATGCCTGATTCTTCAAGAAGTTGA    497
                     ||.||.|||..|.|.||.||.|||||..|||..|||||.|||||.||.||
RBAM_028760__    448 GAGCAGGATCGGTTAACCCCGAGAGAGCGCCATATTCTCCAAGAGGTCGA    497

BSNT_04661___    498 AAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGC    547
                     ||||||.||.||.||.||.||||||||||||||.|||||.||||||||||
RBAM_028760__    498 AAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGC    547

BSNT_04661___    548 GGTCCATTGAATACAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGT    597
                     ||||.||||||||||||.||||.||.|||||.||.||||||||||||||.
RBAM_028760__    548 GGTCGATTGAATACAGCCTGACGTCCATTTTTAACAAGCTGAATGTCGGC    597

BSNT_04661___    598 TCACGGACGGAAGCGGTTTTGATAGCGAAATCAGACGGTGTACTTTAA    645
                     ||.||.||.||||||||..||||.||.||.|||||....|||||.|||
RBAM_028760__    598 TCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTACTATAA    645


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