Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04714 and RBAM_029080
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:16
# Commandline: needle
# -asequence dna-align/BSNT_04714___yuiG.1.9828.seq
# -bsequence dna-align/RBAM_029080___yuiG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04714___yuiG-RBAM_029080___yuiG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04714___yuiG-RBAM_029080___yuiG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04714___yuiG
# 2: RBAM_029080___yuiG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 616
# Identity: 447/616 (72.6%)
# Similarity: 447/616 (72.6%)
# Gaps: 35/616 ( 5.7%)
# Score: 1605.5
#
#
#=======================================
BSNT_04714___ 1 ATGAAACAACGTAAACTTCGTGCGGGAGATATGGCGCTGATTGGCATGTT 50
|||||||||||.||.|||||.|||||.|||||||||||.||.||||||||
RBAM_029080__ 1 ATGAAACAACGCAACCTTCGCGCGGGCGATATGGCGCTTATCGGCATGTT 50
BSNT_04714___ 51 CGCCGCACTTATGGCTGTCGGGGCCAACATTACATCAGTAGCACCCTTTT 100
.||||||||.|||||.|||||.|||||||||||||||.|.||.||.||||
RBAM_029080__ 51 TGCCGCACTGATGGCCGTCGGCGCCAACATTACATCAATGGCTCCTTTTT 100
BSNT_04714___ 101 TACAAGTAGCCGGCATTCCGCTTTCGATGCAGCCGTTTTTCTGTCTCTTG 150
|.|||||.||.||.||||||.|.||..|||||||.||.||||||||.||.
RBAM_029080__ 101 TGCAAGTTGCGGGAATTCCGTTATCACTGCAGCCTTTCTTCTGTCTGTTA 150
BSNT_04714___ 151 GCTGCTTTGCTTCTTGGCAGCAAACGAGCAGCGATTGCCATGATTGTATA 200
||.||..|||||||.|||..||.|||.|||||.|||||.||||..|||||
RBAM_029080__ 151 GCCGCGATGCTTCTCGGCGCCAGACGGGCAGCCATTGCAATGACGGTATA 200
BSNT_04714___ 201 TGCACTTGTGGGATTGGCCGGAGCGCCTGTGTTTGCTCAATTTTCAGCAG 250
.|||.|.|..|||.|.||.||.||||||||.||.||||||||.|||||||
RBAM_029080__ 201 CGCATTGGCCGGACTCGCGGGGGCGCCTGTTTTCGCTCAATTCTCAGCAG 250
BSNT_04714___ 251 GCTTCGCACCGTTTGCAGGGAAAAGCGGCGGGTTTATTATCTCATACATT 300
||||.||.||||||...||.||.||||||||.||||||.||.|.||||||
RBAM_029080__ 251 GCTTTGCGCCGTTTATCGGAAAGAGCGGCGGATTTATTCTCGCTTACATT 300
BSNT_04714___ 301 CCGGCAGCATTTGCAGCGGGATGGTTTTTAGAACGAAACATTCAGCCAAG 350
||.||.|||||||||||.||||||.|..|.||| .||||| ||
RBAM_029080__ 301 CCAGCGGCATTTGCAGCCGGATGGCTGCTGGAA-AAAACA-------AA- 341
BSNT_04714___ 351 TAAAATTCG---------ATTTCTCAT-TGCTTCACTTATCGGAACGGCG 390
||||..|| |||...||| .||.||..|.|||||.||.||.
RBAM_029080__ 342 -AAAACCCGGCCGCCTGCATTATGCATGGGCCTCTTTAATCGGTACCGCC 390
BSNT_04714___ 391 ATCATGTATCTCATCGGCACTACCTATATGTATCTTGCACTGAAGCTGTG 440
.||||.|||.||||.|||||.|||||||.||||.||||.|||||..|.||
RBAM_029080__ 391 GTCATTTATATCATTGGCACGACCTATACGTATATTGCGCTGAAATTATG 440
BSNT_04714___ 441 GATTCATACGCCAGTGAGCTACGGCACGGCTTGGGGCTTT---ATGATTT 487
|.|||||.|.||..|.||||||||.|.|||.||| ||| |||||.|
RBAM_029080__ 441 GCTTCATGCTCCGATCAGCTACGGAATGGCCTGG---TTTTACATGATAT 487
BSNT_04714___ 488 GGTTTATGGTAAAAGATACAGCGCTGGCTGTGATACTGTCGTTTATCGCA 537
|||||.|..|||||||||..|...|.||..||.||.||.|.|..|||||.
RBAM_029080__ 488 GGTTTTTCATAAAAGATATCGTTTTAGCACTGTTATTGGCATCAATCGCG 537
BSNT_04714___ 538 CCAGCAATCTACCGCTCTATTCATAAAGCAACCGGCTTTAACAGAAATCA 587
||.||..|.|||.|.||||||||||||||.||.||.||.|.||||||||
RBAM_029080__ 538 CCTGCCGTTTACAGGTCTATTCATAAAGCGACGGGGTTCAGCAGAAATC- 586
BSNT_04714___ 588 CATATCATCTACGTAA 603
|..|||||
RBAM_029080__ 587 --------CGGCGTAA 594
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