Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04716 and RBAM_029100
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:16
# Commandline: needle
# -asequence dna-align/BSNT_04716___pepA.1.9828.seq
# -bsequence dna-align/RBAM_029100___yuiE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04716___pepA-RBAM_029100___yuiE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04716___pepA-RBAM_029100___yuiE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04716___pepA
# 2: RBAM_029100___yuiE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1547
# Identity: 1139/1547 (73.6%)
# Similarity: 1139/1547 (73.6%)
# Gaps: 100/1547 ( 6.5%)
# Score: 4142.5
#
#
#=======================================
BSNT_04716___ 1 ATGTTTTATGCGGTTCAACAATCAGA---------GCATACAGAAACCCT 41
||||||||||| |||.|| ||||.|.|||||.||
RBAM_029100__ 1 ATGTTTTATGC---------ATCTGATCAACTGCGGCATCCCGAAACACT 41
BSNT_04716___ 42 TGTGGTCGGGCTTTTTCAAAAAAGCCAGCTGACAGGA------AAAGCGT 85
.||..||||.|||||||||||||||..|||||..||| ||.|..|
RBAM_029100__ 42 GGTCATCGGTCTTTTTCAAAAAAGCACGCTGAACGGATTTACGAAGGAAT 91
BSNT_04716___ 86 TGGAAATTGATGAAATGCTCGAAGGCCATCTGACACAGCTTTTAAAAGAG 135
|||| ||||.||.|| ||.||.||||||||.|||||.|||||.||.
RBAM_029100__ 92 TGGA---TGATAAATTG---GACGGTCATCTGACCCAGCTGTTAAAGGAT 135
BSNT_04716___ 136 GGTGATGTCTCTGCGAAACCGAATCAAGTATCAAAAGTATTCCCTCCATC 185
||||||||.||.||.||||..||||..|||||||||||||.||||||..|
RBAM_029100__ 136 GGTGATGTGTCCGCCAAACGCAATCGTGTATCAAAAGTATACCCTCCGGC 185
BSNT_04716___ 186 TTCTGCGGGTATGAAACGGATTTATTTCGTTGGTCTGGGGAGAGAAGCAA 235
|.|..|.|||||||||||.||||||||..|.||.|||||.||||||||..
RBAM_029100__ 186 TGCGACCGGTATGAAACGTATTTATTTTATCGGCCTGGGAAGAGAAGCGG 235
BSNT_04716___ 236 ATTATTCGTTTGAACAGGCGAAGGAATGTTTTGCCCATATTTTTCA--AG 283
||||||||||||||.|..||||.|||||.|||||.|...|.||||| ||
RBAM_029100__ 236 ATTATTCGTTTGAAGATACGAAAGAATGCTTTGCACGAGTATTTCAGCAG 285
BSNT_04716___ 284 CCATTCATAAAGATCGAAAACAAGAAACAGCTGTCCTACTTGATACGTTT 333
.|||||.|||||..||||||.|||..|.|.||..|.||.|||||.||.
RBAM_029100__ 286 --GTTCATCAAGATAAAAAACAGGAAGTATCCGTTTTGCTCGATACATTC 333
BSNT_04716___ 334 ATTTCGGAAGACGTGCCTCCAGCCGATGCCGCTCAT--GCTTTAGCTGAG 381
.|.||.|..||.||||||.|.||||||||||||||| ||||| |.||.
RBAM_029100__ 334 GTCTCCGGGGAAGTGCCTGCCGCCGATGCCGCTCATGCGCTTT--CAGAA 381
BSNT_04716___ 382 AGCTGCCTGCTTGC--TTCCTATGAGGTGCAGGATTATAAGCACAAATCA 429
|||||.|||||||| || ||.||.||||||||||||||.||.||||||
RBAM_029100__ 382 AGCTGTCTGCTTGCGGTT--TACGAAGTGCAGGATTATAAACATAAATCA 429
BSNT_04716___ 430 AATGAGCCTGA-CA--AACAAATTGAA----------GCCGTGTATGTTG 466
||||||||.|| || ||| |||| ||||||
RBAM_029100__ 430 AATGAGCCGGATCAGGAAC----TGAAATCAGTCTGCGCCGTG------- 468
BSNT_04716___ 467 TAACAGATGAAGATACAC----AGGAAGTGCAGGCGGGGCTTCGCGTCGG 512
||.||.|||| || .||||||||||||.||.||...||||||
RBAM_029100__ 469 --ACCGAAGAAG----ACCTGAGGGAAGTGCAGGCCGGCCTGAACGTCGG 512
BSNT_04716___ 513 CCAGGCATACGGACAAGGGACAAATTCGGCTAGAACGCTTGTGAATATGC 562
...|||||||||.||||||||.|||||.||..|.||||||||||||||||
RBAM_029100__ 513 AGCGGCATACGGCCAAGGGACGAATTCAGCCCGCACGCTTGTGAATATGC 562
BSNT_04716___ 563 CGGGAAACATGCTGACAGCGACTGACCTCGCTTCGTATGCTGAAGAGCTT 612
||||.||.||||||||.||.|||||..|.||.||.|||||.|..||||||
RBAM_029100__ 563 CGGGTAATATGCTGACGGCCACTGATTTGGCGTCATATGCCGCCGAGCTT 612
BSNT_04716___ 613 GCGGCGAAATATGATTTTGAGTGTGAGATATTGGAGAAATCAGAGATGGA 662
|||||.|||||.|||||.||||||||.||.||.||.|||...||.|||||
RBAM_029100__ 613 GCGGCAAAATACGATTTCGAGTGTGAAATTTTAGAAAAAGATGAAATGGA 662
BSNT_04716___ 663 AGAGCTCGGTATGGGCGGAATACTTGCGGTAAACCAAGGCTCCACCGAAC 712
|||||||||.|||||||||.|.|||||.||.|||.|.|||||..||||||
RBAM_029100__ 663 AGAGCTCGGCATGGGCGGACTGCTTGCTGTTAACAAGGGCTCATCCGAAC 712
BSNT_04716___ 713 CGCCGAAAATGATTGTGTTGAAATATCAGGGCAAAAAGGAATGGGAAGAC 762
|||||||||||||.||..||||.||||||||||||.|..|.|||||||||
RBAM_029100__ 713 CGCCGAAAATGATCGTTCTGAAGTATCAGGGCAAAGATCAGTGGGAAGAC 762
BSNT_04716___ 763 GTCGTCGGACTAGTCGGGAAAGGAATTACCTTTGACACAGGCGGCTACTC 812
||..||||.||.|||||.|||||||||||||||||.||.|||||.||.||
RBAM_029100__ 763 GTTATCGGCCTGGTCGGTAAAGGAATTACCTTTGATACGGGCGGATATTC 812
BSNT_04716___ 813 CATTAAAACGAAATCTGGAATTGTCGGCATGAAATCAGATATGGGAGGAG 862
.|||||..|||||.|.||.||.||||||||||||...|||||||||||.|
RBAM_029100__ 813 AATTAAGCCGAAAACCGGCATCGTCGGCATGAAAAGCGATATGGGAGGGG 862
BSNT_04716___ 863 CAGCTGCGGTTCTCGGGGCTATGGAAACGATCGGAGAGCTTCGTCCTGAG 912
|.||..||||..|.|||||.|||||||..|||||.||.||.||.|||||.
RBAM_029100__ 863 CCGCCTCGGTATTAGGGGCAATGGAAATTATCGGCGAACTGCGGCCTGAA 912
BSNT_04716___ 913 CAAAACGTGCTGTGC-GTTATTCCATCAACCGATAATATGATCTCCGGCG 961
||||||||||| .|| ||.||.||.||.||.||.||.|||||.||...||
RBAM_029100__ 913 CAAAACGTGCT-CGCTGTCATACCGTCTACGGACAACATGATTTCGTCCG 961
BSNT_04716___ 962 GGGCCATGAAGCCGGATGACGTGATCGTATCTTTAAGCGGAAAAACAATA 1011
..||.||||||||||||||.||.|||||.||..|.|||||||||||.||.
RBAM_029100__ 962 ATGCTATGAAGCCGGATGATGTCATCGTTTCGCTCAGCGGAAAAACCATT 1011
BSNT_04716___ 1012 GAAATCCTTAATACGGATGCTGAAGGAAGGCTAGTGCTTGCAGATGGCAT 1061
||.|||||.||.||.|||||.|||||..|.||.||||||||.||.|||||
RBAM_029100__ 1012 GAGATCCTGAACACCGATGCGGAAGGGCGTCTCGTGCTTGCCGACGGCAT 1061
BSNT_04716___ 1062 TACATACGCGAAACAGCATGGCGCATCAGTTCTTGTCGATGTAGCTACGC 1111
.||||||||.||.|||||.||.||.||.||.|||||.||.||.||.|||.
RBAM_029100__ 1062 CACATACGCCAAGCAGCACGGAGCCTCTGTCCTTGTAGACGTCGCAACGT 1111
BSNT_04716___ 1112 TTACCGGCGGCGTCGTTGTGGCATTA-GGAACAGAAACAACCGGTGCAAT 1160
|.||.|||||.|||.||||.||.||| ||||| ||||..||.||.||.||
RBAM_029100__ 1112 TAACGGGCGGTGTCATTGTTGCCTTAGGGAAC-GAAATGACGGGCGCCAT 1160
BSNT_04716___ 1161 GACAAATGATCAAAGC-TTTTACCAGCAGGTAGCTGATGCTGCACAAGAG 1209
|||.|||.| |...|| |||||..|.|||||.||.||..|.||..||||.
RBAM_029100__ 1161 GACCAATCA-CGCCGCGTTTTATGAACAGGTGGCGGAATCGGCGAAAGAA 1209
BSNT_04716___ 1210 TGCGGCGAGGCGATCTGGCAGCTGCCGATAACAGAGAAGGATAAAAAACG 1259
|.|||||||.|||||||||||||.|||||.|||||.||||||||||||||
RBAM_029100__ 1210 TCCGGCGAGCCGATCTGGCAGCTTCCGATTACAGAAAAGGATAAAAAACG 1259
BSNT_04716___ 1260 CGTGAAAAGCAGCCAAATGGCGGATCTCAGCAATTCACCGGGACGCGAGG 1309
.||||.||.|||.||.|||||.|||.|.|.||||||.||||||.|.||.|
RBAM_029100__ 1260 GGTGAGAAACAGTCAGATGGCTGATTTGAACAATTCTCCGGGAAGAGAAG 1309
BSNT_04716___ 1310 GACATGCGATTATGGCAGGAACGTTTCTTGGTGAATTCGCTGAGTCAACA 1359
|.||.|||||||||||.||..|.||..|||||||||||||.|| .||||
RBAM_029100__ 1310 GCCACGCGATTATGGCGGGGGCATTCATTGGTGAATTCGCGGA--AAACA 1357
BSNT_04716___ 1360 --CCTTGGGTTCACCTTGATATTGCAGGCACAGCGACTGCCAATAAAGCA 1407
||.||||||||.||.||||||||.||.||.||.||.||.||||||||.
RBAM_029100__ 1358 CGCCGTGGGTTCATCTCGATATTGCGGGAACCGCAACGGCGAATAAAGCG 1407
BSNT_04716___ 1408 ACCTGCTTCGGACCGGCCGGGGCTACTGGCGTTATGGCAAGAACACTGGC 1457
||.||||||||.||.|||||.||.||.|||||.||||||||.||..||||
RBAM_029100__ 1408 ACATGCTTCGGCCCTGCCGGCGCAACAGGCGTCATGGCAAGGACGTTGGC 1457
BSNT_04716___ 1458 TACACTTG-CGGAGCGATTTACATTGGAAGAAGATAAAAACGAGTAA 1503
| ...||| |.|||||.|||||....|| |||||||
RBAM_029100__ 1458 T-GTTTTGACTGAGCGCTTTACGCCCGA--AAGATAA---------- 1491
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.