Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04761 and RBAM_029290

See Amino acid alignment / Visit BSNT_04761 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:17
# Commandline: needle
#    -asequence dna-align/BSNT_04761___yutK.1.9828.seq
#    -bsequence dna-align/RBAM_029290___yutK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04761___yutK-RBAM_029290___yutK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04761___yutK-RBAM_029290___yutK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04761___yutK
# 2: RBAM_029290___yutK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1229
# Identity:     985/1229 (80.1%)
# Similarity:   985/1229 (80.1%)
# Gaps:          25/1229 ( 2.0%)
# Score: 3894.0
# 
#
#=======================================

BSNT_04761___      1 ATGAATGTTCTGTGGGGGCTGCTGGGCGCAGTTGCGATCATT-GCTATCG     49
                     .|||||.|..|.|||||||||||.||.||||||||.|| ||| ||.||.|
RBAM_029290__      1 TTGAATATCGTTTGGGGGCTGCTCGGGGCAGTTGCTAT-ATTAGCCATTG     49

BSNT_04761___     50 CGTTTTTATTTTCAGAAAAGAAAAGCAATATTAAGATAAGAACCGTCATC     99
                     |.|||||.||.|||||.|||||||||||.|||||..|..||||||||||.
RBAM_029290__     50 CTTTTTTGTTATCAGAGAAGAAAAGCAAAATTAACCTGCGAACCGTCATT     99

BSNT_04761___    100 GTTGGTTTATGCACACAGGTGGCGTTTGGATACATCGTGTTGAAATGGGA    149
                     ||.||||||||...|||..||||.||.||||.||||||.||.||.|||||
RBAM_029290__    100 GTCGGTTTATGTTTACAAATGGCCTTCGGATTCATCGTATTAAAGTGGGA    149

BSNT_04761___    150 AGCGGGACGCGCTGTTTTTTTATGGTTTTCAAGCCGTGTACAGCTTCTGA    199
                     .||.||.||.||.||.|||||||||||.|||||||||||.||||||||.|
RBAM_029290__    150 CGCCGGCCGGGCCGTATTTTTATGGTTCTCAAGCCGTGTGCAGCTTCTCA    199

BSNT_04761___    200 TTGACTATGCGAATGAAGGCATCAGTTTTATTTTTGGACCGCTTCTAAAG    249
                     ||||.||||||||.|||||||||||.|||||||||||.|||||..||||.
RBAM_029290__    200 TTGATTATGCGAACGAAGGCATCAGCTTTATTTTTGGCCCGCTGTTAAAA    249

BSNT_04761___    250 GTCGG-AGACAGTCCGGCATTTGCATTAAGTGTACTGCCCGTTATCATTT    298
                     ||.|| || |||.|||||.|||||..|.||.||.|||||.||.||.||.|
RBAM_029290__    250 GTGGGCAG-CAGCCCGGCTTTTGCGCTGAGCGTTCTGCCGGTCATTATCT    298

BSNT_04761___    299 TCTTCTCAGCACTGATTGCAGTTTTATATCATTTGAAAATCATGCAGCTC    348
                     |.||||||||.||||||||.|||||.|||||.||||||||||||||||||
RBAM_029290__    299 TTTTCTCAGCGCTGATTGCCGTTTTGTATCACTTGAAAATCATGCAGCTC    348

BSNT_04761___    349 GTTTTCCGTGTCATTGGCGGCGGATTGTCGAAGCTCCTTGGAACAAGCAA    398
                     .|.||.||.|||||.||.||||||.||||.||.||.|||||.|||||||.
RBAM_029290__    349 ATCTTTCGCGTCATCGGAGGCGGACTGTCAAAACTTCTTGGGACAAGCAG    398

BSNT_04761___    399 AACGGAATCTCTGGCGGCTGCTGCCAATATTTTTGTAGGACAATCAGAAT    448
                     |||||||||.||.|||||.|||||.|||||||||||.|||||.||.||||
RBAM_029290__    399 AACGGAATCGCTTGCGGCGGCTGCGAATATTTTTGTCGGACAGTCTGAAT    448

BSNT_04761___    449 CTCCGTTAGTGATCAAACCCCTGATTGCCGGGCTGACGCGCTCTGAGTTG    498
                     |.|||.|.|..||.|||||.||||||||.||..||||.||.||.|||.||
RBAM_029290__    449 CACCGCTTGCCATTAAACCGCTGATTGCGGGATTGACCCGTTCCGAGCTG    498

BSNT_04761___    499 TTTACGATTATGACGAGCGGTCTATCGGCAGTTGCGGGATCTAC-CTTGT    547
                     ||||||||||||||||||||.||.|||||.||.|||||.||.|| ||| |
RBAM_029290__    499 TTTACGATTATGACGAGCGGCCTTTCGGCTGTAGCGGGTTCGACGCTT-T    547

BSNT_04761___    548 TTGGGTACGCGCTTCTTGGTATTCCGATTGAATATTTGCTGGCGGCCAGC    597
                     |.||.|||||.||..|.||.||||||||.|||||..||||||||||||||
RBAM_029290__    548 TCGGTTACGCCCTGTTAGGCATTCCGATCGAATACCTGCTGGCGGCCAGC    597

BSNT_04761___    598 TTTATGGCTGCTCCAGCTGGACTAGTCTTTGGTAAATTGATTATACCCGA    647
                     ||||||||.|||||.||.||.||.||.||.||.|||.|..|.|||||.||
RBAM_029290__    598 TTTATGGCGGCTCCCGCCGGTCTCGTGTTCGGAAAAATTTTAATACCTGA    647

BSNT_04761___    648 AACGGAAAAAACGCAAACCGTAAAAAGCGATTTCAAAATG---GATGAAG    694
                     |||||||||||||||.||..|||||.|||||||.||.|||   ||.||||
RBAM_029290__    648 AACGGAAAAAACGCAGACGATAAAAGGCGATTTTAATATGGACGAAGAAG    697

BSNT_04761___    695 GCGAAGGCGCAGCCAATGTCATTGACGCAGCTGCAAAGGGAGCGTCAACA    744
                     ||||||||||.||.|||||.|||||.|||||.|||||.||.|||||.||.
RBAM_029290__    698 GCGAAGGCGCCGCTAATGTGATTGATGCAGCGGCAAAAGGCGCGTCCACG    747

BSNT_04761___    745 GGACTGCAAATTGCGTTAAACGTTGGGGCGATGCTGCTTGCGTTTGTTGC    794
                     ||.||.||.|||||..||||.||.||.||.|||||||||||||||||.||
RBAM_029290__    748 GGCCTTCAGATTGCTCTAAATGTCGGCGCCATGCTGCTTGCGTTTGTCGC    797

BSNT_04761___    795 GTTAATCGCTGTAGTAAACGGTATTCTCGGCGG----GGCTTTCGGCTTG    840
                     |.|.|||||.|||||.|||||.|||||||||||    ||    |||||.|
RBAM_029290__    798 GCTCATCGCCGTAGTGAACGGAATTCTCGGCGGAATCGG----CGGCTGG    843

BSNT_04761___    841 TTCGGTTTAAAAGGCGTA--ACATTAGAATCCATTCTCGGTTATGTGTTT    888
                     ||||||||.|||  |.||  |||||||||||||||||||||||.||||||
RBAM_029290__    844 TTCGGTTTCAAA--CATATTACATTAGAATCCATTCTCGGTTACGTGTTT    891

BSNT_04761___    889 TCTCCTATCGCCTTTTTGATTGGCGTGCCTTGGCATGAAGC-ATTGCAGG    937
                     ||.||.|||||.|||.|.||.|||||.|||||||||||||| .|||.| |
RBAM_029290__    892 TCACCGATCGCATTTGTAATCGGCGTTCCTTGGCATGAAGCGCTTGGA-G    940

BSNT_04761___    938 CGGGAAGCTATATCGGTCAGAAATTGGTGCTGAATGAGTTTGTCGCTTAT    987
                     ||||||||||||||||.||||||.|.||||||||||||||||||||||||
RBAM_029290__    941 CGGGAAGCTATATCGGACAGAAACTTGTGCTGAATGAGTTTGTCGCTTAT    990

BSNT_04761___    988 TCTAACTTCGGTCCGCACATCGGCGAGTTTTCTAAGAAAACTGCTACCAT   1037
                     ||.||||||||.|||||.||.|..||.||||||||.|||||..||||.||
RBAM_029290__    991 TCAAACTTCGGGCCGCATATTGCGGACTTTTCTAAAAAAACGTCTACGAT   1040

BSNT_04761___   1038 TATCAGTTTCGCGTTATGCGGATTCGCCAATTTTTCATCAATTGCGATTA   1087
                     ||||||.||.|||.|.||||||||.|||||.||.||.||.||||||||||
RBAM_029290__   1041 TATCAGCTTTGCGCTGTGCGGATTTGCCAACTTCTCTTCGATTGCGATTA   1090

BSNT_04761___   1088 TGCTTGGTACGCTGGGCGGATTAGCACCCAGCCGCCGTTCAGATATCGCG   1137
                     ||||.||.||.||||||||.||.||.||.|||||||||||.||.||.|||
RBAM_029290__   1091 TGCTCGGCACACTGGGCGGTTTGGCCCCAAGCCGCCGTTCGGACATTGCG   1140

BSNT_04761___   1138 CGTCTCGGCCTGAAG-GCTGTTCTTGCAGGAACATTAGCCAATCTGCTCA   1186
                     ||.||||| .|.||| ||.|||.||||.||||||.|.||.||.||.||||
RBAM_029290__   1141 CGCCTCGG-ATTAAGAGCGGTTATTGCGGGAACACTCGCAAACCTTCTCA   1189

BSNT_04761___   1187 GCGCAGCCATTGCCGGCATGTTTATATAA   1215
                     ||||.||.|||||||||||||||||.||.
RBAM_029290__   1190 GCGCGGCGATTGCCGGCATGTTTATTTAG   1218


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