Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04770 and RBAM_029340
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:18
# Commandline: needle
# -asequence dna-align/BSNT_04770___yuxL.1.9828.seq
# -bsequence dna-align/RBAM_029340___yuxL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04770___yuxL-RBAM_029340___yuxL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04770___yuxL-RBAM_029340___yuxL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04770___yuxL
# 2: RBAM_029340___yuxL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2051
# Identity: 1422/2051 (69.3%)
# Similarity: 1422/2051 (69.3%)
# Gaps: 151/2051 ( 7.4%)
# Score: 4543.0
#
#
#=======================================
BSNT_04770___ 1 ATGAAAAAGCTGATAACCGCAGACGACATCACAGCGA---TTGTCTCTGT 47
.|||||||.||.|||||||..||.||||| .|||| |.||.||.||
RBAM_029340__ 1 TTGAAAAAACTCATAACCGAGGAGGACAT---TGCGACTCTCGTATCCGT 47
BSNT_04770___ 48 GACAGATCCTCAATACGCCCCAGACGGCACCCGTGCCGCATATGTAAAAT 97
||||||.||.|||||.|||||.|||||||...|.|||||.||.| |
RBAM_029340__ 48 GACAGACCCGCAATATGCCCCTGACGGCAGAAGAGCCGCTTACG-----T 92
BSNT_04770___ 98 C---ACA--AGTGAATCAAGAGAAAGATTCGTATACATCA---AATATAT 139
| ||| |||.|||||..||...|||||.|||.|.||| |.|||
RBAM_029340__ 93 CCGGACAACAGTCAATCATAAGCGTGATTCCTATTCCTCAGCCATTAT-- 140
BSNT_04770___ 140 GGATCTATGAAACGAAAACGGGCGGGTCTGTTCCTTGGACACATGGAGAA 189
|||.|||||.||..||.|.|||...||....||.|||||....||.||.
RBAM_029340__ 141 -GATATATGACACAGAATCCGGCATCTCAAACCCGTGGACTTTCGGGGAC 189
BSNT_04770___ 190 AAGCGAAGCACCGACCCAAGATGGTCTCCGGACGGGTGCACG----CTTG 235
||..|||..||....||..|.|||||.||.||||| ||| ||.|
RBAM_029340__ 190 AACAGAAATACAAGTCCGCGGTGGTCACCTGACGG----ACGGCGCCTCG 235
BSNT_04770___ 236 CCTTTATTTCTGATC---GAGAA-GGCGATGCGGCACAGCTGTATATGAT 281
|||||.||||||| | ||||| |||| |.| |.||||||||.||.||
RBAM_029340__ 236 CCTTTGTTTCTGA-CAGGGAGAACGGCG-TCC--CTCAGCTGTACATCAT 281
BSNT_04770___ 282 -GAGCGCTGAAGGCGGAGAAGCGAGAAAAC---TGACTGATATCCCGTAT 327
|| |||||..||||||||.|| |||.| .|.|.|||||.||.|..
RBAM_029340__ 282 CGA-CGCTGCCGGCGGAGAGGC---AAAGCAGGCGGCCGATATTCCTTGG 327
BSNT_04770___ 328 GGCGTGTCAAAGCCAATATGGTCCCCGGATGGCGAATCGATTCTGGTCAC 377
|||||.|||.|.||.||||||.|.||.||.|||..|||..|.||.||..|
RBAM_029340__ 328 GGCGTATCAGATCCGATATGGGCGCCCGACGGCAGATCCGTGCTTGTGTC 377
BSNT_04770___ 378 TGTCAGTTTG--------GGAGAGGGAGGAAACATTGATGACCGAGAAAA 419
.||||||.|| ||||.| |...|||||...||||||
RBAM_029340__ 378 CGTCAGTCTGACATCAGCGGAGCG--------CGCCGATGAGAAAGAAAA 419
BSNT_04770___ 420 AACAG-AGCAGGAC-AGCTATGAACCTGTTGAAGTGCAAGGCC--TCTCC 465
|| || ||||.||| || |||||.||.|||||..|.|| |.| |..|.
RBAM_029340__ 420 AA-AGAAGCATGACGAG-TATGAGCCGGTTGACATTCA--GTCATTAACA 465
BSNT_04770___ 466 TACAAACGGGACGGCAAAGGGCTG----ACGAGAGGTGCGTATGCCCAGC 511
||.|||||.|||||.|||||.||| |||..||.|| .|||||||
RBAM_029340__ 466 TATAAACGTGACGGGAAAGGCCTGCTGAACGGAAGCTG----GGCCCAGC 511
BSNT_04770___ 512 TTGTGCTTG--TCAGCGT-AAAGTCGGGTGAGATGAAAGAGCTGACAAGT 558
|||||| || |||.|.| ||| ||||.|||||..|..|||||||...|
RBAM_029340__ 512 TTGTGC-TGATTCATCTTGAAA--CGGGGGAGATTCAGCAGCTGACGGAT 558
BSNT_04770___ 559 CACAAAGCTGATCATGGTGATCCTGCTTTTTCTCCTGACGGCAAATGGCT 608
||..||||.||||||..|||..|.||.|||||.||.||.||||....|||
RBAM_029340__ 559 CATGAAGCGGATCATTATGACGCGGCCTTTTCACCGGATGGCAGGCAGCT 608
BSNT_04770___ 609 TGTTTTCTCAGCTAATTT-----AACTGAAACAGATGATGCCAGCAAGCC 653
||..||..|.||.||||| |.||| |.|||.|||.|.|||||
RBAM_029340__ 609 TGCGTTTACCGCCAATTTATGCGAGCTG-----GGTGACGCCGGAAAGCC 653
BSNT_04770___ 654 GCATGATGTTTACATAATGTCACTGGAGTCTGGAGATCTTAAGCAGGTTA 703
|...|||||.||..|.|||...||||.|..||||...||.||||||.|||
RBAM_029340__ 654 GAGCGATGTCTATCTGATGAATCTGGCGGATGGAAGCCTGAAGCAGATTA 703
BSNT_04770___ 704 CACCTCATCGCGGCTCATTCGGATCAAGCTCATTTTCACCAGACGGAAGG 753
|.||.||.|||||.||.|||||.||..||...||||||||.|||||....
RBAM_029340__ 704 CGCCGCACCGCGGTTCTTTCGGTTCCTGCGTGTTTTCACCGGACGGTTCT 753
BSNT_04770___ 754 TATCTTGCTTTGCTTGGAAATGAAAAGGAATATAAGAATGCTACGCTCTC 803
|||.|.||..||||.||..|||||||.||||.|...|||||.||..|...
RBAM_029340__ 754 TATATCGCGATGCTGGGCCATGAAAATGAATTTCGCAATGCGACTTTAGA 803
BSNT_04770___ 804 AAAGGCGTGGCTCTATGATATCGAACA---AGGCCGCCTCACATGTCTTA 850
.||.||.|||||.||.||..| |||.| || ||.|||.|.||.||.|
RBAM_029340__ 804 GAAAGCATGGCTGTACGACGT-GAAAACTGAG--CGGCTCTCCTGCCTGA 850
BSNT_04770___ 851 CTGAGATGCTGGACGTTCATTT-AGCGGATGCGCTGATTGGAGATTCATT 899
|.||.||||||||.|||||||| ||| |||||||||||||..||||||.|
RBAM_029340__ 851 CCGACATGCTGGATGTTCATTTGAGC-GATGCGCTGATTGCGGATTCAAT 899
BSNT_04770___ 900 GATCGGTGGTGCTGAACAGCGC-----CCGATTTGGACAAAGGACAGCCA 944
.||.||.||.| ||| ||| |||.|.||||||||.|||.|.||
RBAM_029340__ 900 CATAGGAGGAG-TGA----CGCCCCGGCCGGTATGGACAAACGACGGGCA 944
BSNT_04770___ 945 AGGGTTTTATGTCATCGGCACAGATCAAGGCAGTACGGGCATCTATTATA 994
.||.|||||.||..||||.|..||.||.||.||.||.||.||.|||||||
RBAM_029340__ 945 GGGTTTTTACGTTCTCGGGAGCGAGCAGGGAAGCACCGGTATTTATTATA 994
BSNT_04770___ 995 TTTCGATTGAAGGCCTTGTGTATCCGATTCGTCTGGAAAAAGAGTACATC 1044
|.||||||||.|||||.||.||||||||.||..|.|||.|||||||..|.
RBAM_029340__ 995 TCTCGATTGACGGCCTCGTCTATCCGATCCGATTAGAAGAAGAGTATGTG 1044
BSNT_04770___ 1045 AATAGCTTTTCTCTTTCA-CCTGAT--GAACAGCACTTTATTGCCAGTG- 1090
||..|.|||.|| ||||| |||||| |||.|| ||.|||.|| ||
RBAM_029340__ 1045 AACGGTTTTGCT-TTTCATCCTGATCAGAAAAG--CTGTATCGC---TGT 1088
BSNT_04770___ 1091 ---TGACAAAGCCGGACAGACCGAGTGAGCTTTACAGTATCCCGCTTGGA 1137
||.||||.|||.|||| ||....|||||||||||.||..||||.|.|
RBAM_029340__ 1089 CATTGCCAAACCCGCACAG-CCTTCCGAGCTTTACAGCATTTCGCTCGAA 1137
BSNT_04770___ 1138 CA---GGAAGAGAAACAGCTGACTGGCGCGAATGACAAGTTTGTCAGGGA 1184
.| |||||||||.||..||||...||..|||||...||||.|...|||
RBAM_029340__ 1138 GATGGGGAAGAGAAGCAATTGACATCCGACAATGATCGGTTTATTGAGGA 1187
BSNT_04770___ 1185 GCATACGATATCAATACCTGAAGAGATTCAATATGCTACAGAAGACGGCG 1234
||..|..|||||..|.||.|||.||.|.|||||||..|||.|.|||||..
RBAM_029340__ 1188 GCGCATCATATCCGTTCCGGAAAAGCTGCAATATGAAACAAAGGACGGGC 1237
BSNT_04770___ 1235 TGATGGTGAACGGCTGGCTGATGAGGCCTGCACAAATGGAAGGTGAGACA 1284
|||.|||.|||||||||.|..|.|.|||.||.....|.||||..||...|
RBAM_029340__ 1238 TGACGGTAAACGGCTGGTTTTTAAAGCCCGCCGTTTTTGAAGAGGATCAA 1287
BSNT_04770___ 1285 ACATATCCACTTATTCTTAACATACACGGCGGTCCGCATATGATGTACGG 1334
||.|||||.||.|||||..|||||||||||||.||.||.|||||||||||
RBAM_029340__ 1288 ACTTATCCGCTCATTCTATACATACACGGCGGGCCTCACATGATGTACGG 1337
BSNT_04770___ 1335 ACATACATATTTTCATGAGTTTCAGGTGCTGGCGGCGAAAGGATACGCGG 1384
.|||||.||||||||.||.||.||.||||||||.||..|||||||.||.|
RBAM_029340__ 1338 CCATACGTATTTTCACGAATTCCAAGTGCTGGCCGCACAAGGATATGCTG 1387
BSNT_04770___ 1385 TCGTTTATATCAATCCGAGAGGAAGCCACGGCTACGGGCAGGAATTTGTG 1434
||||.|||.||||.||||||||||||||.||||||||.|||||.|||||.
RBAM_029340__ 1388 TCGTGTATGTCAACCCGAGAGGAAGCCATGGCTACGGACAGGATTTTGTC 1437
BSNT_04770___ 1435 AATGCG-GTCAGAGGAGATTATGGGGGAAAGGATTA-TGACGATGTGATG 1482
||| || |||||.||.|||||.||.||....||||| || .|||||.|||
RBAM_029340__ 1438 AAT-CGTGTCAGGGGTGATTACGGAGGCGGAGATTACTG-TGATGTCATG 1485
BSNT_04770___ 1483 CAGGCTGTGGATGAGGCT-ATCAAACGAGATCCGCATATTGATCCTAAGC 1531
|||||.||||||||.||| .|||..|| .|||||..|||||| .|||
RBAM_029340__ 1486 CAGGCGGTGGATGAAGCTGTTCAGGCG-TATCCGTTTATTGA----CAGC 1530
BSNT_04770___ 1532 GG----CTCGGTGTCACGGGCGGAAGCTACGGAGGTTTTATGACCAACTG 1577
|| ||||||||.||||||||||||||||||||.||||||||.||.||
RBAM_029340__ 1531 GGCCGTCTCGGTGTGACGGGCGGAAGCTACGGAGGGTTTATGACGAATTG 1580
BSNT_04770___ 1578 GATCGTCGGGCAGACGAACCGCTTTAAAGCTGCCGTTACCCAGCGCTCGA 1627
|||.|||||.|||||..||||.||||||||.|||||.||.||||||||.|
RBAM_029340__ 1581 GATTGTCGGACAGACAGACCGTTTTAAAGCAGCCGTCACGCAGCGCTCCA 1630
BSNT_04770___ 1628 TATCAAATTGGATCAGCTTTCACGGCGTCAGTGATATCGGCTATTTCTTT 1677
|.|||||||||.|||||||.|||||.|||||.||||||||.|..||.|||
RBAM_029340__ 1631 TTTCAAATTGGTTCAGCTTCCACGGTGTCAGCGATATCGGTTTCTTTTTT 1680
BSNT_04770___ 1678 ACAGACTGGCAGCTTGAGCATGACATGTTTGAGGACACAGAAAAGCTCTG 1727
||.|||||||||||.|.||||||..||||||||||..|.||.|||||.||
RBAM_029340__ 1681 ACCGACTGGCAGCTCGGGCATGATTTGTTTGAGGAAGCGGATAAGCTTTG 1730
BSNT_04770___ 1728 GGACCGGTCTCCTTTAAAATACGCAGCAAACGTGGAGACACCGCTTTTGA 1777
|||.||.||||||.|||||||.||..|...|||...|||.||||||||||
RBAM_029340__ 1731 GGATCGTTCTCCTGTAAAATATGCGTCCCGCGTTTCGACGCCGCTTTTGA 1780
BSNT_04770___ 1778 TACTGCATGGCGAGCGGGATGACCGATGTCCGATCGAGCAGGCGGAGCAG 1827
|.|||||.||.||.||.||||||||.||||||||.|||||||||||||||
RBAM_029340__ 1781 TCCTGCACGGTGAACGAGATGACCGCTGTCCGATAGAGCAGGCGGAGCAG 1830
BSNT_04770___ 1828 CTGTTTATCGCTCTGAAAAAAATGGGCAAGGAAACCAAGCTTG----TCC 1873
||.||||..||..||||.|||.|| ||..||||.|.| |.| |||
RBAM_029340__ 1831 CTTTTTACTGCATTGAAGAAACTG---AACAAAACGACG-TCGTTCATCC 1876
BSNT_04770___ 1874 GTTTTCCGAATGCATCGCACAATTTGTCACGCACCGGACACCCAAGACAG 1923
|.||||||||.||..||||..|..||||..|.|.|||.||.||...||||
RBAM_029340__ 1877 GATTTCCGAAAGCTACGCATGAGCTGTCGAGAAGCGGCCATCCGGAACAG 1926
BSNT_04770___ 1924 CGGATCAAGCGCCTGAATTATATCAGCTCATGGTTTGACCAATATCTCTA 1973
|||||.||.|||.|...||||||..|.|||||||||||..|.|||.|.||
RBAM_029340__ 1927 CGGATGAAACGCATCCGTTATATTTGTTCATGGTTTGATGACTATTTGTA 1976
BSNT_04770___ 1974 A 1974
|
RBAM_029340__ 1977 A 1977
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