Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04775 and RBAM_029380

See Amino acid alignment / Visit BSNT_04775 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:19
# Commandline: needle
#    -asequence dna-align/BSNT_04775___yutH.1.9828.seq
#    -bsequence dna-align/RBAM_029380___yutH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04775___yutH-RBAM_029380___yutH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04775___yutH-RBAM_029380___yutH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04775___yutH
# 2: RBAM_029380___yutH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1053
# Identity:     780/1053 (74.1%)
# Similarity:   780/1053 (74.1%)
# Gaps:          72/1053 ( 6.8%)
# Score: 2881.0
# 
#
#=======================================

BSNT_04775___      1 ATGGTGAAAGGTACAATAAAAGAAAAATACGGCATTCACATCAGGCAGCT     50
                        .|||||.|.|..||.|||||||||||||||||.|||.||||.|||||
RBAM_029380__      1 ---ATGAAAAGCATCATTAAAGAAAAATACGGCATCCACGTCAGACAGCT     47

BSNT_04775___     51 TTCCATGTACCAGCACACATATCAATGCTTTCAGACGCCTAATTCATACT    100
                     ||||.|.||.|||   |.|||.||||||||.||||||||||||||.|.||
RBAM_029380__     48 TTCCGTTTATCAG---AAATACCAATGCTTCCAGACGCCTAATTCCTTCT     94

BSNT_04775___    101 TTCTGATTGTCCCCGTTTCCCAATTCTCAGAAACAGAGCTGGCGGAGCTT    150
                     ||||.||..|.|||||||||...||.||..||.||||||||.||||||||
RBAM_029380__     95 TTCTTATAATTCCCGTTTCCGGGTTTTCGCAATCAGAGCTGACGGAGCTT    144

BSNT_04775___    151 TATTACATGAGTCAGTATTTACAAGAACAAAGTGACCCATACGTTTCGGT    200
                     ||.||||||||||||||||||||||||||||||||||||||||||||.||
RBAM_029380__    145 TACTACATGAGTCAGTATTTACAAGAACAAAGTGACCCATACGTTTCAGT    194

BSNT_04775___    201 TTTTATCTTTACAAAAGAAGGTGAACTGACATTTGAACATGAGGGAAAAA    250
                     .|||||||||||.||.|||||.||||||||.|||||..|.||.||.||||
RBAM_029380__    195 GTTTATCTTTACGAAGGAAGGAGAACTGACCTTTGAGGACGAAGGCAAAA    244

BSNT_04775___    251 CGTA--CGCTCTGCTGAAGGCGGC----CCCCCCTTATTCAAACAGGGCG    294
                     ||||  ||||||  |.||.|||.|    |||..|    ||||||.||.||
RBAM_029380__    245 CGTATGCGCTCT--TAAAAGCGCCGATTCCCGTC----TCAAACCGGTCG    288

BSNT_04775___    295 TTCTCCATTGGAGCGGAGCTTGCGGAATTTCACCGAAAAGGCCGAGGATA    344
                     ||.|||.|.||||.|||||||||.|||||||||.|||||||.||.||.|.
RBAM_029380__    289 TTTTCCGTCGGAGGGGAGCTTGCCGAATTTCACAGAAAAGGGCGGGGTTT    338

BSNT_04775___    345 TCCATATGAGGTGAAGGCAGCCGGAAGAATCGGCCAGTGGAAGGATCTGT    394
                     |||.||.||.|||||.|.|||.||.||.||||||||.||||||||..|.|
RBAM_029380__    339 TCCGTACGAAGTGAAAGAAGCGGGCAGGATCGGCCAATGGAAGGACTTAT    388

BSNT_04775___    395 GGGGAAAACGAATTGATCAGCTGGAAGCATTCTG---GCAGAGAAAGGTT    441
                     ||||||||||..|.||||||||||||.|||||||   |||||.||   ||
RBAM_029380__    389 GGGGAAAACGGGTGGATCAGCTGGAATCATTCTGGATGCAGAAAA---TT    435

BSNT_04775___    442 CAGACCCCTCCGCATGAGCCATTCGATAAAAAAATGATCGAATCATTTCC    491
                     ||.|...||||||.|||.||.|||||.||.||||||||||||.|||||||
RBAM_029380__    436 CATATGTCTCCGCTTGAACCGTTCGAAAAGAAAATGATCGAAGCATTTCC    485

BSNT_04775___    492 ATATTATTTAGGACTGTCAGAAAACGCGATACAATATTTAGTGGACACTG    541
                     .|||||||.|||..|..|.||||||||.||.||||||||||||||.||.|
RBAM_029380__    486 TTATTATTCAGGCTTAGCGGAAAACGCCATTCAATATTTAGTGGATACGG    535

BSNT_04775___    542 AGCTGGATGACAAGCCCCAAGCCGCTGATTCAGGAACGATATGCCATCAG    591
                     |||||||||||||.|||...||.|..||.||.||.||.||.|||||||||
RBAM_029380__    536 AGCTGGATGACAATCCCGGCGCAGAAGACTCGGGGACAATCTGCCATCAG    585

BSNT_04775___    592 CGGATGGAAAGGCATACATGGTCACCGGAATCATTGATCAGGATTCCGGC    641
                     |||||||||.||.||||.|||||...|||||||||||||.|.|||||||.
RBAM_029380__    586 CGGATGGAACGGGATACCTGGTCGGAGGAATCATTGATCCGCATTCCGGG    635

BSNT_04775___    642 GGATTGGGTGTTTGACCACGCTTCCCGTGATTTGGCTGAATATATGAG--    689
                     .||||||||.||.|||||.|||.||||||||.|.||.|||||||||.|  
RBAM_029380__    636 CGATTGGGTATTCGACCATGCTGCCCGTGATATTGCGGAATATATGCGCA    685

BSNT_04775___    690 GCATACGTTTTTGCATC------ACAGAC-------AAGATTTTAATCAG    726
                     ||  ||.|.||||.|||      || |||       |||||         
RBAM_029380__    686 GC--ACATATTTGTATCATCGTGAC-GACCTGCTCAAAGAT---------    723

BSNT_04775___    727 CAGGGCTTTCTCTTTTTACAGGAATACGAGCAAGTCACACCGCTGTCTTC    776
                        ||.|||.|.|||.|.||||||||.||||||.|.||.|||.|.||.||
RBAM_029380__    724 ---GGGTTTTTGTTTCTGCAGGAATATGAGCAAATTACGCCGTTATCCTC    770

BSNT_04775___    777 ATTTTCGAAACGCCTTTTATACAGCCGTCTGCTTTTCCCGCTTCATTATT    826
                     .|||||.||||||||.||.||||||||.|||||.||.|||||.||||..|
RBAM_029380__    771 CTTTTCCAAACGCCTGTTTTACAGCCGCCTGCTGTTTCCGCTCCATTTCT    820

BSNT_04775___    827 TTGAAATCGTAGAAAGCTATTACATGTCATCA-GAATCAGAAAAGCATTA    875
                     |.||.|..||.||.|||||||||||.|| ||| ||.||.||||||||.||
RBAM_029380__    821 TCGAGACGGTGGAGAGCTATTACATTTC-TCATGATTCTGAAAAGCAGTA    869

BSNT_04775___    876 TTTTGAAGAACAGCTTAACTTCATTCTTAATGACTGTGGGCGTTATGAAC    925
                     ||..|||||.||||||.|||.|||||||...|||||....||.|||||||
RBAM_029380__    870 TTACGAAGAGCAGCTTGACTACATTCTTGCCGACTGCACCCGCTATGAAC    919

BSNT_04775___    926 AATTTCTCAATACAGCGCAGGAATTCATGAATATGCGGGCGCAGAAGCTG    975
                     |.|||.|..|.|||...||..|..|.||||||.|..||.||..|.||.|.
RBAM_029380__    920 AGTTTTTACAGACATGTCACAACATGATGAATGTCAGGTCGGCGCAGGTT    969

BSNT_04775___    976 TTTGTTCCAC-----GCGTCAGCTGGCTCGGCAAAGG---CAGCTCAGGG   1017
                     |||||.||.|     |||     ||||||||.|||||   |||.||   |
RBAM_029380__    970 TTTGTCCCGCCTGTGGCG-----TGGCTCGGGAAAGGAATCAGTTC---G   1011

BSNT_04775___   1018 TGA   1020
                     |.|
RBAM_029380__   1012 TAA   1014


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