Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04792 and RBAM_029480

See Amino acid alignment / Visit BSNT_04792 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:20
# Commandline: needle
#    -asequence dna-align/BSNT_04792___yunF.1.9828.seq
#    -bsequence dna-align/RBAM_029480___yunF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04792___yunF-RBAM_029480___yunF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04792___yunF-RBAM_029480___yunF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04792___yunF
# 2: RBAM_029480___yunF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 871
# Identity:     688/871 (79.0%)
# Similarity:   688/871 (79.0%)
# Gaps:          41/871 ( 4.7%)
# Score: 2766.0
# 
#
#=======================================

BSNT_04792___      1 GTGATTTATATCGGACTGACGGGGTGGGGGGATCATGACAGCATCTATCC     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_029480__      1 GTGATTTATATCGGACTGACGGGGTGGGGGGATCATGACAGCATCTATCC     50

BSNT_04792___     51 GCCGAAAACGGCCAGCCAGAAAAAATTGCAGGCCTATTCCTCCCATTTTC    100
                     |||.|||||.||..|||.|.|||||.||||||..||||||||||||||||
RBAM_029480__     51 GCCTAAAACAGCGGGCCCGCAAAAACTGCAGGTGTATTCCTCCCATTTTC    100

BSNT_04792___    101 CGATCGTGGAATTAGATGCGAGCTTTTACGCGATTCAGCCGGCGCGCAAT    150
                     |.|||||.||..|.||.|||||||||||||||||.|||||.||.||||||
RBAM_029480__    101 CCATCGTTGAGCTGGACGCGAGCTTTTACGCGATACAGCCCGCCCGCAAT    150

BSNT_04792___    151 AATGAAAAGTGGGTGAAGGAAACGCCCGAAACCTTCCAATTTATCGTGAA    200
                     |||||||..|||||.||.||.|||||.|||.|.||.||||||.||.|.||
RBAM_029480__    151 AATGAAAGATGGGTCAAAGAGACGCCGGAATCTTTTCAATTTGTCATTAA    200

BSNT_04792___    201 AGCATATCAGGGCATGACAGGGCATCAGCGCGGCGAAATTCCCTTTGACT    250
                     .||||||||.||.|||||.||.||||||||||||||.|||||||.|||.|
RBAM_029480__    201 GGCATATCAAGGAATGACGGGCCATCAGCGCGGCGATATTCCCTATGAAT    250

BSNT_04792___    251 CAAAAGAGGAGATGTTTGATGCGTTTAAGGTGTCTTTAACGCCATATTTA    300
                     |.||.||.||.||||||||.|||||||||.||||.|||.||||.|||.||
RBAM_029480__    251 CGAAGGAAGAAATGTTTGAGGCGTTTAAGCTGTCATTATCGCCGTATATA    300

BSNT_04792___    301 ---CATAGCAATAAGCTCGCCATGGTGCTGTTTCAATTTCCGCCTTGGTT    347
                        |||.|   .|||||.||||||||||||||.|||||.|||||.|||||
RBAM_029480__    301 GAGCATGG---AAAGCTTGCCATGGTGCTGTTCCAATTCCCGCCGTGGTT    347

BSNT_04792___    348 TGACTGCAAGAAGGAGAATGTCGCCTATTTGAGATGGTGCAAGCACCAAA    397
                     ||||||||||||.||.||.|||||.|||||.||||||||||.|.|.||.|
RBAM_029480__    348 TGACTGCAAGAAAGAAAACGTCGCATATTTAAGATGGTGCAGGGAGCAGA    397

BSNT_04792___    398 TGGGAGATATCCCTTGTGCGCTTGAATTCAGAAACCGTTCCTGGTTCTCG    447
                     ||||.||||||||.||.||||||||||||.|.|||||.||.|||||.||.
RBAM_029480__    398 TGGGCGATATCCCGTGCGCGCTTGAATTCCGCAACCGGTCTTGGTTTTCC    447

BSNT_04792___    448 CCGCCATTTTATGAGCAGACGCTTTCATTTATGAAAGCGGAAGGCTGGAT    497
                     ||||||||||||||.|||||||||||.||||||||.|.||||||||||||
RBAM_029480__    448 CCGCCATTTTATGAACAGACGCTTTCCTTTATGAAGGAGGAAGGCTGGAT    497

BSNT_04792___    498 TCACAGTGTCTGTGATGAACCGCAAATCGGAGAAGGCAGCGTTCCGACTG    547
                     ||||||..|.|||||.||.||.||||||||.||.||||||.|||||||.|
RBAM_029480__    498 TCACAGCATATGTGACGAGCCACAAATCGGCGAGGGCAGCATTCCGACCG    547

BSNT_04792___    548 TGTTGCGCGCGACCGATGAAAACAAAACGCTCGTCAGATTTCACGGACGC    597
                     |..||...||.||.||||||.|.||||||||.|||.|.||||||||.||.
RBAM_029480__    548 TCCTGAAAGCAACGGATGAAGAAAAAACGCTTGTCCGTTTTCACGGGCGG    597

BSNT_04792___    598 AACAAGCAGGGCTGGATGAAGCCTGATGGCGGGAAAAACTGGCGGGAGGT    647
                     |||||||||||||||||.||.||.||.|||||..||||||||||.|||||
RBAM_029480__    598 AACAAGCAGGGCTGGATCAAACCAGACGGCGGACAAAACTGGCGTGAGGT    647

BSNT_04792___    648 CAGGTACTTATACCGCTACAACCAACAGGAGCTGGAGGATTGGAAAA---    694
                     |||.||.|||||||||||.|||.||||||||||..|.||||||||||   
RBAM_029480__    648 CAGATATTTATACCGCTATAACAAACAGGAGCTCAAAGATTGGAAAAACA    697

BSNT_04792___    695 ------AGCACCTGAATGAATTGCAGCA-----GCAA--TGTAAGGATGT    731
                           ||.|.|||||  ||    ||||     ||||  ||||       
RBAM_029480__    698 ATCTTCAGGAGCTGAA--AA----AGCAGTCGCGCAATCTGTA-------    734

BSNT_04792___    732 TTTTGTCCTGTTCAACAATAATTCCGGCGGTGACGCTGCGGATAATGGCA    781
                        |||.||.|||||||||||.||.|||||.|||||.||.|||||.|||.
RBAM_029480__    735 ---TGTGCTCTTCAACAATAACTCAGGCGGAGACGCCGCCGATAACGGCC    781

BSNT_04792___    782 AGCAGATGCTTGAACTGCTTGATATCGAGTACAGCGGACTTGCTCCGAGA    831
                     ...|||||||||||.||.|.||||||...||.|.|||.||||||||||..
RBAM_029480__    782 TTGAGATGCTTGAAATGTTAGATATCTCATATACCGGGCTTGCTCCGAAG    831

BSNT_04792___    832 CAGCTCGATTTATT---TTAG    849
                     ||||||||..||||   .|||
RBAM_029480__    832 CAGCTCGACCTATTCAGCTAG    852


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04792 and RBAM_029480

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
