Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04823 and RBAM_029610

See Amino acid alignment / Visit BSNT_04823 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:21
# Commandline: needle
#    -asequence dna-align/BSNT_04823___yurJ.1.9828.seq
#    -bsequence dna-align/RBAM_029610___yurJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04823___yurJ-RBAM_029610___yurJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04823___yurJ-RBAM_029610___yurJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04823___yurJ
# 2: RBAM_029610___yurJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1148
# Identity:     814/1148 (70.9%)
# Similarity:   814/1148 (70.9%)
# Gaps:          85/1148 ( 7.4%)
# Score: 2794.5
# 
#
#=======================================

BSNT_04823___      1 ATGGCTTCATTAACATTTGAACACGTCAAAAAATCATATCACTCACAATT     50
                     |||||.||||||||||||||.||..||||||||.||||...|.|.|||| 
RBAM_029610__      1 ATGGCATCATTAACATTTGACCATATCAAAAAAACATACGGCGCCCAAT-     49

BSNT_04823___     51 AACC-------GTGAAGGACTTTGATTTAGATGTAAAGGATAAGGAGCTT     93
                        |       ||||||||.|||.|.|||||||||||.|||.|||||||.
RBAM_029610__     50 ---CGGCGGCAGTGAAGGATTTTCACTTAGATGTAAAAGATGAGGAGCTG     96

BSNT_04823___     94 TTGGTGCTGGTGGGGCCGTCAGGATGCGGAAAATCAACAACGCTGCGGAT    143
                     .|||||||.||.|||||.||.||.|||||.|||||.||.||.||..|.||
RBAM_029610__     97 CTGGTGCTTGTCGGGCCCTCCGGCTGCGGCAAATCTACGACACTCAGAAT    146

BSNT_04823___    144 GGTGGCTGGATTAGAAAGCATTTCTGAAGGAAATCTTCTTATTGATGGGG    193
                     |.|.||.|||.|.||.|||||||||||.||.||.|||..|||.|||||.|
RBAM_029610__    147 GATTGCCGGACTGGAGAGCATTTCTGAGGGGAAGCTTTATATCGATGGAG    196

BSNT_04823___    194 AGCG-GGTCAATGATCTTCCGCCGAAAGAACGTGATATTGCGATGGTATT    242
                     | || |||.||.|||||.||.|||||.||.||.|||||.||||||||.||
RBAM_029610__    197 A-CGCGGTGAACGATCTGCCCCCGAAGGATCGCGATATCGCGATGGTTTT    245

BSNT_04823___    243 CCAGAACTATGCGCTTTATCCGCATATGACGGTTTTTGATAATATGGCGT    292
                     .|||||.||.|||||.|||||.||.||||||||.||||||||||||||||
RBAM_029610__    246 TCAGAATTACGCGCTGTATCCCCACATGACGGTGTTTGATAATATGGCGT    295

BSNT_04823___    293 TTGGATTAAAGCTCAGAAAGATGGCGAAACAGGAAATTGCCGAGCGGGTT    342
                     |.||.||.||||||||||||.||.|||||.|.|||||.||.|||||.||.
RBAM_029610__    296 TCGGTTTGAAGCTCAGAAAGCTGCCGAAAAAAGAAATCGCAGAGCGAGTC    345

BSNT_04823___    343 CATGCGGCAGCCAGA-ATTTTAGAAATTGAACATTTGCTGAAGAGAAAAC    391
                     |...||||.||| || |||||.|||||.|..|||.||||.|||.|.||||
RBAM_029610__    346 CGGACGGCCGCC-GATATTTTGGAAATCGGGCATCTGCTCAAGCGGAAAC    394

BSNT_04823___    392 CGAAGGCGCTCTCCGGCGGGCAGCGGCAAAGGGTGGCGCTTGGCAGGTCG    441
                     |||||||.||.||.|||||.||||||||..||||.|||||.|||.|||||
RBAM_029610__    395 CGAAGGCTCTTTCAGGCGGACAGCGGCAGCGGGTTGCGCTCGGCCGGTCG    444

BSNT_04823___    442 ATTGTGAGGGAGCCGAAGGTCTTTTTAATGGACGAGCCGCTTTCTAATCT    491
                     ||.|||.||||||||||.||.|||.|.|||||||||||||||||.||..|
RBAM_029610__    445 ATCGTGCGGGAGCCGAAAGTGTTTCTGATGGACGAGCCGCTTTCCAACTT    494

BSNT_04823___    492 GGATGCAAAACTAAGAGTGACGATGCGGACAGAAATCAGCAAGCTGCACC    541
                     .||.||.|||.|..|||||||||||||..|.||||||||||||||.||.|
RBAM_029610__    495 AGACGCGAAATTGCGAGTGACGATGCGCGCCGAAATCAGCAAGCTCCATC    544

BSNT_04823___    542 AGCGATTAGAGGCAACGATCATTTATGTCACGCATGACCAGACCGAAGCA    591
                     ||||.||..|.||.||.|||.|||||||.||||||||.|||||.|||||.
RBAM_029610__    545 AGCGTTTGAAAGCGACCATCGTTTATGTGACGCATGATCAGACGGAAGCG    594

BSNT_04823___    592 ATGACAATGGGAGATCGGATTGTCGTCATGAATGAAGGGGAAATTCAGCA    641
                     |||||||||||.||.|||||||||||.|||||||||||.||.||||||||
RBAM_029610__    595 ATGACAATGGGCGACCGGATTGTCGTGATGAATGAAGGAGATATTCAGCA    644

BSNT_04823___    642 AGTGGCGAAACCTCATGACATTTATCGTTACCCGGCCAATTTGTTTGTCG    691
                     .|..||.|..||.|||||.|||||||.|||.|||||.|||.|||||||.|
RBAM_029610__    645 GGCCGCAAGCCCCCATGAGATTTATCATTATCCGGCGAATCTGTTTGTGG    694

BSNT_04823___    692 CAGGCTTCATTGGCTCTCCCGGAATGAACTTTTTGAAAGGCATCATAGAA    741
                     |.||.||.||.||.|||||..|.|||||.|||.|.||||||..|||.|||
RBAM_029610__    695 CGGGTTTTATCGGTTCTCCGAGTATGAATTTTATAAAAGGCGCCATTGAA    744

BSNT_04823___    742 CA---------GCAGCATGGCGAGCTTTTTTTTACAAATTCTTCGATCCG    782
                     .|         |||  ||||       |.||||.|...|||.||..|.||
RBAM_029610__    745 GAAGGTCACGGGCA--ATGG-------TATTTTGCCGGTTCGTCCGTTCG    785

BSNT_04823___    783 GCTTCATATTCCTGAAGAAAAAGCAAAGCGGC--------TGAAGGAAAA    824
                     .||.|..|||||..|||||     ||||||||        ||.||   ||
RBAM_029610__    786 TCTGCCCATTCCGAAAGAA-----AAAGCGGCCGTTCTTGTGCAG---AA    827

BSNT_04823___    825 GGGATATGCCGGAGAACAGATGATTGCCGGTGTACGGCCGGAGCACATCA    874
                     .|||||...|||..|..||||||||||.||..|.||.||||||||..|.|
RBAM_029610__    828 AGGATACAGCGGTAAGGAGATGATTGCGGGGCTGCGTCCGGAGCATTTGA    877

BSNT_04823___    875 CACAAATGACAGGA-AAT--GACCAGTTGTTTGATTCAGTGTTTCAAGCG    921
                     |.|   |..|.||| |||  ||.||...|..|||..|.||||..|  |||
RBAM_029610__    878 CGC---TTGCCGGACAATCAGAGCACCCGCCTGAAGCGGTGTGCC--GCG    922

BSNT_04823___    922 AAC----GTGGAAGTGAATGAAAATCTGGGCTCGGAGCTCATAGTGCATG    967
                       |    |.||||||...||||||..|.|||.|||||.|    ||.|.| 
RBAM_029610__    923 --CTGTGGCGGAAGTATGTGAAAACTTAGGCGCGGAGAT----GTACGT-    965

BSNT_04823___    968 TCATG------GCTGGGGACGAGCGACTCAAGGTCCGCCTGGACGG----   1007
                     |||||      || ||.||.||.||..|.|.|.||||.||.|||||    
RBAM_029610__    966 TCATGCGGTGAGC-GGAGATGACCGCATGACGATCCGTCTTGACGGCGCT   1014

BSNT_04823___   1008 AAACACGCGAATCGATGCAGGCGATTCAATCCAGCTCTCAGTGAAAATGG   1057
                     ..|||.|.|||.|    |.||||||.|.||.|.|||..|.||.||.|||.
RBAM_029610__   1015 TCACAGGTGAAAC----CCGGCGATGCCATTCTGCTTGCGGTCAATATGA   1060

BSNT_04823___   1058 ACCACGTCGTCTTTTTCGATGTGGAAACGGAAGAGGCTGTGTATTAG-   1104
                     |||..|.|||||||||.|||||.||.||.|||.|.||.||.|||| | 
RBAM_029610__   1061 ACCGGGCCGTCTTTTTTGATGTCGACACTGAAAACGCCGTATATT-GA   1107


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