Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04827 and RBAM_029640
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:22
# Commandline: needle
# -asequence dna-align/BSNT_04827.1.9828.seq
# -bsequence dna-align/RBAM_029640___yurM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04827-RBAM_029640___yurM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04827-RBAM_029640___yurM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04827
# 2: RBAM_029640___yurM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 886
# Identity: 417/886 (47.1%)
# Similarity: 417/886 (47.1%)
# Gaps: 398/886 (44.9%)
# Score: 1781.0
#
#
#=======================================
BSNT_04827 0 -------------------------------------------------- 0
RBAM_029640__ 1 ATGCTTCCTGAAAAGACGGACTTGCGTCATGCCCGTCAGGCCGTCAGAAC 50
BSNT_04827 0 -------------------------------------------------- 0
RBAM_029640__ 51 AGGCGGAAAACCGAGAAAATGGTATGTCGGGGAAACGTCTGTGTGGCTGT 100
BSNT_04827 0 -------------------------------------------------- 0
RBAM_029640__ 101 TTCTCTTTATCTACCTCATTGCCGTTGCATATCCGCTGTTATGGATGGCG 150
BSNT_04827 0 -------------------------------------------------- 0
RBAM_029640__ 151 GTCAGCGCCTTTAAAAGCTCGGATGAGATTTTTGAGCACAGCTGGTCGCT 200
BSNT_04827 0 -------------------------------------------------- 0
RBAM_029640__ 201 GCCCTCTGTCTGGCATCCCGAAAACTTCGTATCCGCATGGAACCAAGGGA 250
BSNT_04827 0 -------------------------------------------------- 0
RBAM_029640__ 251 TTTCCGCTTATTTTATGAACAGCGTCATTGTGACCGTGCTGACTTGTCTC 300
BSNT_04827 0 -------------------------------------------------- 0
RBAM_029640__ 301 ATCACCGTATTTGTGAGCGCCTGGGCGGCATACGGGCTGGCCCGTTTTCA 350
BSNT_04827 1 ----------------------------------------------ATGC 4
||||
RBAM_029640__ 351 ATTTAAAGGAAAAGGGTTTGTGCTGATCATTTGTCTTGGCGGTTTGATGC 400
BSNT_04827 5 TGACGCCGCAGGTCAGTCTTATGCCGCTTTATTCTATTATTCAGTCGCTT 54
||||||||||||||||||||.|||||||.||.||.|||||.|||||..|.
RBAM_029640__ 401 TGACGCCGCAGGTCAGTCTTGTGCCGCTGTACTCCATTATCCAGTCATTG 450
BSNT_04827 55 GGCCTGTACAATACGTATTGGGCGTTAATCCTGCCGTATGCGGCTTATCG 104
||.||||||||||||||||||||.||.||.||.|||||.||.||.||.||
RBAM_029640__ 451 GGACTGTACAATACGTATTGGGCTTTGATTCTTCCGTACGCAGCCTACCG 500
BSNT_04827 105 GATCCCATTCACCATCATTTTGATCCGCTCTTATTTTCTTTCTATTTCCA 154
.||.||.||.|||.|.|||.|||||||.||.||||||.|.||.|||||||
RBAM_029640__ 501 TATTCCGTTTACCGTGATTCTGATCCGTTCCTATTTTTTGTCGATTTCCA 550
BSNT_04827 155 AAGAATTGGAGGAGGCGGCCTATTTGGATGGGTGTACAAGTTTTGGAGTA 204
||||..|.|||||.||.||||||.|||||||.|||||||||||.|||.||
RBAM_029640__ 551 AAGAGCTTGAGGAAGCTGCCTATCTGGATGGATGTACAAGTTTCGGAATA 600
BSNT_04827 205 TTTTTCAGAATTTTCTTACCGATGAGCGTGCCGATTTTGGTGACATCCGG 254
|||||||||||.||||||||.|||||||||||||||.||||||||||.||
RBAM_029640__ 601 TTTTTCAGAATATTCTTACCTATGAGCGTGCCGATTCTGGTGACATCAGG 650
BSNT_04827 255 CATTTTGACGGCTTACCATACATGGAATGAGTTTATGTTTGCGATTATTT 304
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_029640__ 651 CATTTTGACGGCTTACCATACATGGAATGAGTTTATGTTTGCGATTATTT 700
BSNT_04827 305 TCATAGATGATGAGAATTTGCGGACCATTCCAGCCGGGCTGATGCAGTTC 354
|.||.||||||||.|||||.|||||.|||||.||||||||||||||||||
RBAM_029640__ 701 TTATCGATGATGAAAATTTACGGACGATTCCGGCCGGGCTGATGCAGTTC 750
BSNT_04827 355 AGAGACGCGCTGCAGACAGACTGGGGCGTCCTGCTGGCGGGGTTAACGAT 404
|||||.|||||||||||.||.||||||||.||||||||.|||.|.|||||
RBAM_029640__ 751 AGAGATGCGCTGCAGACGGATTGGGGCGTGCTGCTGGCCGGGCTGACGAT 800
BSNT_04827 405 TTCAGCCGCGCCGATTATTATTCTATTTTTATTGATGCAGAAATATTTTG 454
|||.||.||.|||||.||....||.||||||||||||||||.|||||||.
RBAM_029640__ 801 TTCTGCTGCTCCGATCATCGCGCTGTTTTTATTGATGCAGAGATATTTTA 850
BSNT_04827 455 TCCGCGGGATTGCAAGC-GGCAGTGTAAAAGGATAA 489
|||||||.||||| .|| ||.||.||.|||||||||
RBAM_029640__ 851 TCCGCGGCATTGC-TGCGGGAAGCGTGAAAGGATAA 885
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