Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00422 and RBAM_029690

See Amino acid alignment / Visit BSNT_00422 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:11
# Commandline: needle
#    -asequence dna-align/BSNT_00422___ybgB.1.9828.seq
#    -bsequence dna-align/RBAM_029690___ybgB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00422___ybgB-RBAM_029690___ybgB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00422___ybgB-RBAM_029690___ybgB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00422___ybgB
# 2: RBAM_029690___ybgB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 305
# Identity:     180/305 (59.0%)
# Similarity:   180/305 (59.0%)
# Gaps:          61/305 (20.0%)
# Score: 471.0
# 
#
#=======================================

BSNT_00422___      1 ATGTTTTTATTGACGAATGGAAAAGTGCTGTGGGGAGCAGTGATTGCT-G     49
                     ||||||   ||||.|||||..|||||||||||||||||.|| |.|.|| |
RBAM_029690__      1 ATGTTT---TTGATGAATGATAAAGTGCTGTGGGGAGCTGT-AGTTCTCG     46

BSNT_00422___     50 CATTCATCCTTTCAATTGTATTTTACCCTTTTCTGCCGACGCAGATGCCG     99
                     |.||.||.||.||.|||||.|||||.||.|||||.||..|..|.|||.|.
RBAM_029690__     47 CCTTTATTCTGTCGATTGTGTTTTATCCGTTTCTTCCTGCTGATATGGCC     96

BSNT_00422___    100 ATTCATTATGATGTTGCGAACAGTCCGGATCTGACGGTTAACAA------    143
                     |||||.|||||.||..|||||.|||||.||   ||    |.|||      
RBAM_029690__     97 ATTCACTATGACGTGTCGAACCGTCCGAAT---AC----ATCAATCAATA    139

BSNT_00422___    144 -----GCTGGCGGGGACT-GTGATGCTGCCTGTTTTGATGGTGGTGTTTG    187
                          ||.||||     | .||||..|.||.||..|.|||.||  .|.||
RBAM_029690__    140 AAACGGCCGGCG-----TCCTGATTTTTCCCGTGCTCATGATG--ATCTG    182

BSNT_00422___    188 CAT---------------GGGCGCGGAAGATCAATTGGCAATTTGTATTC    222
                     |||               ||.||       ||.|   ||.||   |..||
RBAM_029690__    183 CATGTTATTCAGAAAAAAGGTCG-------TCCA---GCTAT---TCCTC    219

BSNT_00422___    223 GCAGTGTATATTTTGCTGAT-TTGCCACATTGTCGTCCTTTGTTTAGCGC    271
                     |..||.||...|.||||||| .|| ||.||||.|||..|.||..|.||.|
RBAM_029690__    220 GTCGTTTACTGTCTGCTGATCGTG-CATATTGCCGTGATGTGGCTGGCAC    268

BSNT_00422___    272 TCTAA    276
                     |.|||
RBAM_029690__    269 TGTAA    273


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