Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04843 and RBAM_029770

See Amino acid alignment / Visit BSNT_04843 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:22
# Commandline: needle
#    -asequence dna-align/BSNT_04843___csd.1.9828.seq
#    -bsequence dna-align/RBAM_029770___csd.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04843___csd-RBAM_029770___csd.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04843___csd-RBAM_029770___csd.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04843___csd
# 2: RBAM_029770___csd
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1221
# Identity:    1056/1221 (86.5%)
# Similarity:  1056/1221 (86.5%)
# Gaps:           0/1221 ( 0.0%)
# Score: 4620.0
# 
#
#=======================================

BSNT_04843___      1 ATGAATATCACAGATATTCGTGAGCAGTTCCCGATCCTTCATCAGCAAGT     50
                     |||||||||||.|||||||||||.||||||||||||||||||||||||||
RBAM_029770__      1 ATGAATATCACCGATATTCGTGAACAGTTCCCGATCCTTCATCAGCAAGT     50

BSNT_04843___     51 GAACGGACATGATCTCGTTTATCTCGACAGCGCGGCGACTTCCCAGAAGC    100
                     ||||||||||||.|||||.||.||.|||||||||||||||||||||||||
RBAM_029770__     51 GAACGGACATGACCTCGTGTACCTTGACAGCGCGGCGACTTCCCAGAAGC    100

BSNT_04843___    101 CGCGTGCTGTCATTGAAACACTGGATAAGTATTATAACCAATACAATTCC    150
                     |||||||||||||||||.||.|||||.|||||||.|.|.|||||||||||
RBAM_029770__    101 CGCGTGCTGTCATTGAAGCAGTGGATCAGTATTACAGCAAATACAATTCC    150

BSNT_04843___    151 AATGTTCACCGGGGCGTCCATACACTTGGAACCAGAGCGACAGATGGTTA    200
                     |||||.|||.|.|||||.|||||.|||||.||.|||||||||||.||.||
RBAM_029770__    151 AATGTCCACAGAGGCGTTCATACTCTTGGCACGAGAGCGACAGACGGCTA    200

BSNT_04843___    201 TGAAGGAGCGCGTGAAAAAGTCCGCAAGTTTATTAACGCGAAGTCAATGG    250
                     ||||||.|||||||||||||||||.||||||||.||.|||||.|||||||
RBAM_029770__    201 TGAAGGTGCGCGTGAAAAAGTCCGTAAGTTTATCAATGCGAAATCAATGG    250

BSNT_04843___    251 CTGAGATTATTTTCACAAAAGGCACGACCACATCACTGAATATGGTGGCG    300
                     |||||.|.||||||||||||||||||||.||.||||||||||||||||||
RBAM_029770__    251 CTGAGGTCATTTTCACAAAAGGCACGACAACTTCACTGAATATGGTGGCG    300

BSNT_04843___    301 TTAAGCTATGCGCGCGCCAACCTGAAACCTGGTGATGAAGTGGTCATCAC    350
                     .|.||||||||.|||||||.|.|.|||||.||||||||||||||||||||
RBAM_029770__    301 CTGAGCTATGCCCGCGCCAGCTTAAAACCCGGTGATGAAGTGGTCATCAC    350

BSNT_04843___    351 CTACATGGAGCATCATGCGAATATCATTCCGTGGCAGCAGGCTGTAAAAG    400
                     |.|.||||||||||||||||||||.|||||||||||||||||.|||||||
RBAM_029770__    351 CCAAATGGAGCATCATGCGAATATTATTCCGTGGCAGCAGGCAGTAAAAG    400

BSNT_04843___    401 CAACTGGCGCCACATTAAAATATATTCCGCTGCAGGAAGACGGAACGATT    450
                     ||||.|||||.||.|||||||||||.|||.|||||||||||||.|||.||
RBAM_029770__    401 CAACCGGCGCGACTTTAAAATATATCCCGATGCAGGAAGACGGCACGCTT    450

BSNT_04843___    451 TCTTTAGAAGACGTCAGAGAAACGGTCACAAGCAACACAAAAATTGTTGC    500
                     ||.|||||.||||||.|..|.||.|||||||||.|.||.||.||.||.||
RBAM_029770__    451 TCGTTAGACGACGTCCGGCAGACTGTCACAAGCCATACGAAGATCGTGGC    500

BSNT_04843___    501 GGTGTCTCATGTATCTAATGTTCTCGGCACGGTCAACCCGATTAAAGAAA    550
                     .||..|||||||.||.||.||.||.||||||.||||||||||||||||.|
RBAM_029770__    501 AGTCGCTCATGTGTCAAACGTGCTGGGCACGATCAACCCGATTAAAGAGA    550

BSNT_04843___    551 TGGCGAAAATCGCTCATGACAATGGGGCTGTCATTGTGGTGGACGGTGCA    600
                     |.||.||||||||||||||||||||.||.|||||.|||||.|||||.||.
RBAM_029770__    551 TCGCCAAAATCGCTCATGACAATGGCGCGGTCATCGTGGTAGACGGGGCG    600

BSNT_04843___    601 CAAAGCACGCCTCACATGAAAATTGACGTGCAGGATCTCGATTGCGACTT    650
                     ||||||||.||.|||||||||||.|||||.|||||..|.|||||||||||
RBAM_029770__    601 CAAAGCACACCGCACATGAAAATCGACGTTCAGGACTTGGATTGCGACTT    650

BSNT_04843___    651 CTTTGCGCTTTCTTCCCATAAAATGTGCGGACCTACTGGCGTTGGTGTGC    700
                     |||.||||||||||||||||||||||||||.||.||.||..|.||.||||
RBAM_029770__    651 CTTCGCGCTTTCTTCCCATAAAATGTGCGGCCCGACGGGAATCGGCGTGC    700

BSNT_04843___    701 TGTACGGAAAGAAAGCCCTGCTGGAAAATATGGAGCCTGCCGAATTCGGC    750
                     |||||||.|||||||..|||||.||.|||||||||||.||||||||.|||
RBAM_029770__    701 TGTACGGCAAGAAAGAACTGCTTGAGAATATGGAGCCGGCCGAATTTGGC    750

BSNT_04843___    751 GGTGAAATGATCGACTTTGTCGGGCTTTATGAATCAACTTGGAAAGAGCT    800
                     ||.||.||||||||||||||.|||||||||||||||||||||||||||||
RBAM_029770__    751 GGCGAGATGATCGACTTTGTAGGGCTTTATGAATCAACTTGGAAAGAGCT    800

BSNT_04843___    801 TCCGTGGAAATTCGAAGCGGGTACGCCGATTATTGCAGGAGCAATCGGTC    850
                     ||||||||||||.|||||.||.|||||||||||.|||||.||.|||||..
RBAM_029770__    801 TCCGTGGAAATTTGAAGCAGGCACGCCGATTATCGCAGGCGCGATCGGAT    850

BSNT_04843___    851 TCGGTGCCGCCATTGATTTTCTCGAAGCAATCGGTCTTGATGAGATTTCC    900
                     |.||.|||||.|||||||||||.||||..|||||.||.||.|||||||||
RBAM_029770__    851 TGGGAGCCGCGATTGATTTTCTTGAAGAGATCGGACTCGACGAGATTTCC    900

BSNT_04843___    901 CGCCATGAGCACAAGCTTGCAGCTTATGCGCTTGAACGCTTCCGCCAGCT    950
                     ||.||||||||.|||||||||||.|||||||||||.||.|||...|||||
RBAM_029770__    901 CGGCATGAGCATAAGCTTGCAGCCTATGCGCTTGACCGTTTCGAGCAGCT    950

BSNT_04843___    951 TGACGGCGTAACGGTTTACGGGCCGGAAGAGCGTGCCGGGCTTGTCACAT   1000
                     .||||||||.|||||.|||||.|||.|||||||.||.||.|||||.||||
RBAM_029770__    951 AGACGGCGTGACGGTATACGGTCCGAAAGAGCGGGCGGGACTTGTGACAT   1000

BSNT_04843___   1001 TTAACCTTGATGATGTTCATCCGCACGATGTGGCGACTGTGCTTGATGCG   1050
                     ||||.||||||||.|||||.||.||.|||||.||||||||.||.|||||.
RBAM_029770__   1001 TTAATCTTGATGAGGTTCACCCTCATGATGTCGCGACTGTCCTCGATGCT   1050

BSNT_04843___   1051 GAGGGAATCGCAGTCAGAGCCGGCCACCATTGTGCGCAGCCGCTGATGAA   1100
                     |||||.||.||.|||||||||||.||.|||||.||.||||||||.|||||
RBAM_029770__   1051 GAGGGCATTGCGGTCAGAGCCGGACATCATTGCGCCCAGCCGCTCATGAA   1100

BSNT_04843___   1101 ATGGCTGGATGTAACTGCTACTGCAAGAGCAAGCTTTTATCTGTATAATA   1150
                     |||||||||||||.||||||||||.|||||.||.||||||||||||||||
RBAM_029770__   1101 ATGGCTGGATGTATCTGCTACTGCGAGAGCGAGTTTTTATCTGTATAATA   1150

BSNT_04843___   1151 CAGAGGAAGAGATTGATAAGCTTGTGGAAGCTCTTCAAAAGACAAAGGAG   1200
                     |||||||||||||.||||||||.|.||||||.||.|||||||||||||||
RBAM_029770__   1151 CAGAGGAAGAGATCGATAAGCTCGCGGAAGCCCTCCAAAAGACAAAGGAG   1200

BSNT_04843___   1201 TATTTTACAAATGTCTTTTAA   1221
                     ||.||||||||||||||||||
RBAM_029770__   1201 TACTTTACAAATGTCTTTTAA   1221


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