Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04851 and RBAM_029800

See Amino acid alignment / Visit BSNT_04851 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:23
# Commandline: needle
#    -asequence dna-align/BSNT_04851.1.9828.seq
#    -bsequence dna-align/RBAM_029800___yurZ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04851-RBAM_029800___yurZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04851-RBAM_029800___yurZ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04851
# 2: RBAM_029800___yurZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 377
# Identity:     221/377 (58.6%)
# Similarity:   221/377 (58.6%)
# Gaps:          94/377 (24.9%)
# Score: 821.0
# 
#
#=======================================

BSNT_04851         1 TTGAATCAAGACAGAGG----------AAGCATGCAGGACGCGTTAAAAC     40
                     .||..||||.|| .|||          ||||.||||.|||||.||.||||
RBAM_029800__      1 GTGGCTCAATAC-CAGGATAACGGAAAAAGCGTGCATGACGCATTGAAAC     49

BSNT_04851        41 AATATAAACATGGTTTAGGCACATTTGAACAAAAGATGCCGCTGATGGGA     90
                     ||||||||.|.||||||||||.|||.||.|||||.||||||.|||||||.
RBAM_029800__     50 AATATAAAGAAGGTTTAGGCATATTCGAGCAAAAAATGCCGATGATGGGG     99

BSNT_04851        91 AGAAAATTTAACGAATTTACTGAACAGTGCTTTGCCGGGAATTCTCTGAC    140
                     .|.||.|||||.|||||||||||||||||.||..|.|.|.||||..|.||
RBAM_029800__    100 CGGAAGTTTAATGAATTTACTGAACAGTGTTTCTCAGCGGATTCATTAAC    149

BSNT_04851       141 TGAAAGAGAAAAACAGCTGATCGCCCTCGGAATTGCCATCAATGCTCAGG    190
                     |||||.|||.|||||..|.|||||.||.||.||...|||||..|||||.|
RBAM_029800__    150 TGAAAAAGAGAAACAATTAATCGCTCTGGGCATCAGCATCAGCGCTCAAG    199

BSNT_04851       191 ACGAATATTGCATGATCTATCATACAAAAGGCTGTCTCGATCAGGGAGCG    240
                     |.||||.|||||||||.||||||||.||.|||||.||.||.||.||.|||
RBAM_029800__    200 ATGAATTTTGCATGATTTATCATACGAAGGGCTGCCTTGACCAAGGGGCG    249

BSNT_04851       241 ACAGAAGAAAACATTCTCGAAGCCGTCAGTGTGGCAGCGGCATTTTAA--    288
                     |||||||||||||||||.||.|.|.||.|.||.||.||||||||      
RBAM_029800__    250 ACAGAAGAAAACATTCTTGAGGTCATCGGCGTCGCGGCGGCATT----CG    295

BSNT_04851       288 --------------------------------------------------    288
                                                                       
RBAM_029800__    296 GGGGCGGTGCGGCTCTCAGTCAGGGAGTGACCCTCGTGCAGCAGTGTATT    345

BSNT_04851       288 ---------------------------    288
                                                
RBAM_029800__    346 CAGGAATTCGGACATACGACGCATTAG    372


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