Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04872 and RBAM_029940
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:25
# Commandline: needle
# -asequence dna-align/BSNT_04872___yusM.1.9828.seq
# -bsequence dna-align/RBAM_029940___yusM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04872___yusM-RBAM_029940___yusM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04872___yusM-RBAM_029940___yusM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04872___yusM
# 2: RBAM_029940___yusM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 960
# Identity: 669/960 (69.7%)
# Similarity: 669/960 (69.7%)
# Gaps: 102/960 (10.6%)
# Score: 2216.5
#
#
#=======================================
BSNT_04872___ 1 ---ATGTTGAGACATGTGTTTTTATTCTTATCTCAAAATAAAACACTTAC 47
.||..||| |||.|| ||||||.||.||..|||||||||..|||||
RBAM_029940__ 1 TTGCTGCGGAG-CATATG--TTTATTTTTGTCGAAAAATAAAATGCTTAC 47
BSNT_04872___ 48 CAAGTTCGCAAAAGCATACGGAACGCGGCTT-GGAGCACGAAGGTTTGTC 96
.||.|||||..|.||.||||||| .|.|||| ||.||..|||||||.||.
RBAM_029940__ 48 AAAATTCGCCCAGGCTTACGGAA-TCCGCTTCGGTGCGGGAAGGTTCGTT 96
BSNT_04872___ 97 GCAGGGGATACGATT----GAATCGGCGGTTAAGACCGTCAAAAGGCTAA 142
||||||||.|| |.| ||| ||.||.||.||.||.||..||||.|
RBAM_029940__ 97 GCAGGGGAAAC-ACTCACGGAA---GCTGTGAAAACGGTAAAGCGGCTGA 142
BSNT_04872___ 143 ACAGATCCGGTTTGTGTGCAACAATTGATTATTTAGGCGAGTATGCAGCT 192
||..|...||..|||..||..|.||||||||..||||.||.|||||.|.|
RBAM_029940__ 143 ACCAAAAAGGGCTGTCGGCTTCGATTGATTACCTAGGTGAATATGCGGGT 192
BSNT_04872___ 193 TCGGAAAAAGAAGCAAACCAAG--TCGCAGAGGAATGCAAGAAAGCCATT 240
||.||.||.||.||.|| ||| ..||.||.|||||.||.|||| ||.|
RBAM_029940__ 193 TCAGAGAAGGATGCGAA--AAGGACGGCGGAAGAATGTAAAAAAG-CAAT 239
BSNT_04872___ 241 CA-AGCCATTGCCGAACATCAATTGGACTCAGAGCTTTCACTTAAGCTGA 289
|| .||.||||||||..|||||.||||.|..|||||.||.||.||..|.|
RBAM_029940__ 240 CAGGGCGATTGCCGAGAATCAACTGGATTGTGAGCTGTCGCTGAAATTAA 289
BSNT_04872___ 290 CCTCAATCGGGCTCGATCTTTCAGAAGAACTTGCTCTTACTCATTTGCG- 338
|.||.|||||.||.|||.||||.| |||| |||| |||
RBAM_029940__ 290 CATCCATCGGTCTGGATATTTCCG-AGAA---GCTC----------GCGG 325
BSNT_04872___ 339 --CGCCAT----------TCTTTCCGTTGCGAAGCAATATGATGTTG--- 373
|..||| |.||..|| ||.||||.|..|.|.||
RBAM_029940__ 326 AACAGCATGTCAGAGACATATTGACG----GAGGCAAAAGAACGCTGCGT 371
BSNT_04872___ 374 --CTGTGACCATTGATATGGAAGACTATTCCCATTATGAACAG----ACA 417
||||.||.|||||||||||.||||||| ||..||| ||| ||.
RBAM_029940__ 372 GCCTGTAACGATTGATATGGAGGACTATT--CAAGATG--CAGCCGTACG 417
BSNT_04872___ 418 CTT----TCTATTTACAGGCAATGCAAACAGGAATTTGAGAAGCTCGGCA 463
||| |.||| |.||..|||||.|.|||.||...|..||||||||
RBAM_029940__ 418 CTTGAGCTGTAT----AAGCGGTGCAAGCCGGATTTCCCGGTGCTCGGCA 463
BSNT_04872___ 464 CGGTCATTCAGGCGTATCTGTACCGGGCGGCAGAAGATATCAGAAAGATG 513
|.|||||||||||.|||.|||||||.||.||.|||||||||| |
RBAM_029940__ 464 CCGTCATTCAGGCTTATTTGTACCGCGCAGCTGAAGATATCA-------G 506
BSNT_04872___ 514 CGG------GACTTA-AAGCCGAATCTCAGACTTGTAAAAGGCGCTTATA 556
||| |.|.|| |||||||..|||||.|||||||||||||||||||
RBAM_029940__ 507 CGGTCTGATGCCATACAAGCCGAGGCTCAGGCTTGTAAAAGGCGCTTATA 556
BSNT_04872___ 557 AAGAATCTGCGGCCGTAGCGTTTCCCGACAAAAGAGGAACGGACCTTCAT 606
|||||||.||||||||.||.||.||.||.||||.||.|||.||.||||||
RBAM_029940__ 557 AAGAATCGGCGGCCGTTGCATTCCCTGATAAAAAAGCAACCGATCTTCAT 606
BSNT_04872___ 607 TTTCAG-AGCTTAATAAAGCTGCAGTTGTTAAGCGG----GAACTACACG 651
|||||| ||| |.||.|||||||||.|.||.||||| ||| |||
RBAM_029940__ 607 TTTCAGCAGC-TGATTAAGCTGCAGCTTTTGAGCGGCCATGAA----ACG 651
BSNT_04872___ 652 GCTGTCGCCACACATGACGATGACATCATTAAATTTACG-AAACAGCTCG 700
||.||.||.||||||||.||||||||||||...|.|||| ||||| |||.
RBAM_029940__ 652 GCGGTGGCGACACATGATGATGACATCATTTCTTATACGAAAACA-CTCA 700
BSNT_04872___ 701 TCGCCGAACATC-GAATCCCCGCGTCGCAATTTGAGTTTCAAATGCTATA 749
||..|||||||| ||.|||||| |..|||.|||||.||.||||||||.||
RBAM_029940__ 701 TCAGCGAACATCAGATTCCCCG-GGAGCAGTTTGAATTCCAAATGCTGTA 749
BSNT_04872___ 750 CGGCATCAGGCCGGAGCGTCAGAAGGAACTCGCCAAGGAAGGCTACAGAA 799
|||||||||..|||||||.||||||||.||.|||.|.|||||.|||||.|
RBAM_029940__ 750 CGGCATCAGAACGGAGCGCCAGAAGGAGCTTGCCGAAGAAGGATACAGGA 799
BSNT_04872___ 800 TGCGTGTGTATGTCCCATATGGAACGGACTGGTTCAGCTACTTTATGAGA 849
||.|.|||||||||||.||.|||||.||.||||.|.|.|||.|.||||||
RBAM_029940__ 800 TGAGGGTGTATGTCCCGTACGGAACCGATTGGTACGGGTACCTGATGAGA 849
BSNT_04872___ 850 AGAATTGCCGAACGGCCTGCCAATGCAGCGTTTGTGTTAAAAGGAATTTT 899
|||||||||||.||.||.||.|||||.||.||||||.|.|||||.||.||
RBAM_029940__ 850 AGAATTGCCGAGCGCCCGGCAAATGCGGCATTTGTGCTGAAAGGGATCTT 899
BSNT_04872___ 900 GAAAAAGTGA 909
.|||||.|.|
RBAM_029940__ 900 CAAAAAATAA 909
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